23andme-converter: code_size: 23555 commercial_warning: null data_size: 60 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.1.0: null 1.1.1: null 1.1.2: null 1.2.0: null 1.2.1: null 1.2.2: null 1.3.0: null 1.3.1: null 1.4.0: null 1.5.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: 1.0.2 1.0.4: 1.0.2 1.1.0: 1.0.2 1.1.1: 1.0.2 1.1.2: 1.0.2 1.2.0: 1.0.2 1.2.1: 1.0.2 1.2.2: 1.0.2 1.3.0: 1.3.0 1.3.1: 1.3.0 1.4.0: 1.3.0 1.5.0: 1.3.0 datasource: null description: Allows user to input files in 23andMe format. In both the graphical interface and command line usage, file format will be automatically detected after this converter is installed. developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.5.0 publish_time: 2019-05-22T19:12:35.744619+0000 requires: - varmeta - vcfinfo>=1.1.5 - hg19wgs size: 23615 tags: - input/output title: 23andMe Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.4 - 1.1.0 - 1.1.1 - 1.1.2 - 1.2.0 - 1.2.1 - 1.2.2 - 1.3.0 - 1.3.1 - 1.4.0 - 1.5.0 abraom: code_size: 10969 commercial_warning: 'For academic use only. ' data_size: 113610752 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Exomic allele frequencies of an elderly cohort of Brazilians in the ABraOM database developer: citation: "Naslavsky, Yamamoto et al. (2017). Exomic variants of an elderly cohort\ \ of Brazilians in the ABraOM database. Human Mutation, 38(7), 751\xE2\u20AC\ \u201C763." email: '' name: Naslavsky, Yamamoto et al. organization: NCBI Hackathon 2019 website: http://abraom.ib.usp.br/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T18:27:35.853157+0000 requires: null size: 113621721 tags: - allele frequency title: ABRaOM type: annotator versions: - 1.0.0 aggregator: code_size: 32464 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.2: null data_versions: 1.0.0: null 1.0.2: null datasource: null description: Aggregator developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.2 publish_time: '2018-11-20T22:16:49.000000' requires: null size: 32464 tags: null title: Aggregator type: aggregator versions: - 1.0.0 - 1.0.2 alfa: code_size: 120291 commercial_warning: null data_size: 19821930500 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:35:24.767374+0000 requires: - alfa_group size: 19822050791 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator' type: annotator versions: - 1.0.0 alfa_african: code_size: 121829 commercial_warning: null data_size: 23177492484 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:36:36.943153+0000 requires: - alfa_group size: 23177614313 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator African' type: annotator versions: - 1.0.0 alfa_asian: code_size: 122452 commercial_warning: null data_size: 24120875012 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:38:53.151457+0000 requires: - alfa_group size: 24120997464 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator Asian' type: annotator versions: - 1.0.0 alfa_european: code_size: 120349 commercial_warning: null data_size: 19817850884 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:40:14.130274+0000 requires: - alfa_group size: 19817971233 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator European' type: annotator versions: - 1.0.0 alfa_group: code_size: 107864 commercial_warning: null data_size: 0 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: null datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-19T16:32:07.810017+0000 requires: null size: 107864 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator' type: group versions: - 1.0.0 alfa_latin_american: code_size: 123448 commercial_warning: null data_size: 20335691780 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:41:58.454801+0000 requires: - alfa_group size: 20335815228 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator Latin American' type: annotator versions: - 1.0.0 alfa_other: code_size: 120329 commercial_warning: null data_size: 18854877188 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:43:40.045906+0000 requires: - alfa_group size: 18854997517 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator Others' type: annotator versions: - 1.0.0 ancestrydna-converter: code_size: 35311 commercial_warning: null data_size: 60 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null 1.1.1: null 1.1.2: null 1.2.0: null 1.2.1: null 1.2.2: null 1.3.0: null 1.3.1: null 1.4.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: 1.0.2 1.0.3: 1.0.2 1.0.4: 1.0.2 1.1.0: 1.0.2 1.1.1: 1.0.2 1.1.2: 1.0.2 1.2.0: 1.0.2 1.2.1: 1.0.2 1.2.2: 1.0.2 1.3.0: 1.3.0 1.3.1: 1.3.0 1.4.0: 1.3.0 datasource: null description: Allows user to input files in AncestryDNA format. In both the graphical interface and command line usage, file format will be automatically detected after this converter is installed. developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.4.0 publish_time: 2019-05-22T19:12:52.009274+0000 requires: - varmeta - vcfinfo>=1.1.5 - hg19wgs size: 35371 tags: - input/output title: AncestryDNA Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 - 1.1.1 - 1.1.2 - 1.2.0 - 1.2.1 - 1.2.2 - 1.3.0 - 1.3.1 - 1.4.0 arrvars: code_size: 143687 commercial_warning: null data_size: 2000900 data_sources: 1.0.0: January 2020 1.1.0: January 2020 1.2.0: January 2020 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 1.2.0: 1.2.0 datasource: January 2020 description: Examines variants associated with arrhythmia diseases such as Brugada Syndrome and Long QT Syndrome. developer: citation: 'Kroncke, Brett M., et al. "A Bayesian method to estimate variant-induced disease penetrance." PLoS genetics 16.6 (2020): e1008862.' email: support@cravat.us name: Vanderbilt University Medical Center for Arrhythmia Research and Therapeutics organization: Vanderbilt University Medical Center for Arrhythmia Research and Therapeutics website: https://oates.app.vumc.org/vancart/ groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-17T20:17:22.944577+0000 requires: null size: 2144587 tags: - clinical relevance title: Arrhythmia Channelopathy Variants type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 biogrid: code_size: 87355 commercial_warning: null data_size: 17891328 data_sources: 3.5.167: 4.0.0 3.5.168: v3.5.167 3.5.169: v3.5.167 3.5.170: v3.5.167 3.5.171: v3.5.167 3.5.172: v3.5.167 3.5.173: v3.5.167 data_versions: 3.5.167: 3.5.167 3.5.168: 3.5.167 3.5.169: 3.5.167 3.5.170: 3.5.167 3.5.171: 3.5.167 3.5.172: 3.5.167 3.5.173: 3.5.167 datasource: v3.5.167 description: Comprehensive interaction repository developer: citation: 'Oughtred R, Stark C, Breitkreutz BJ, et al. (2018). The BioGRID interaction database: 2019 update. Nucleic Acids Res. 47(D1):D529-D541.' email: support@cravat.us name: BioGRID organization: BioGRID website: https://thebiogrid.org/ groups: [] has_logo: true hidden: false latest_version: 3.5.173 publish_time: 2019-01-30T18:34:54.833895+0000 requires: - wgbiogrid size: 17978683 tags: - genes - interactions - dbnsfp title: BioGRID type: annotator versions: - 3.5.167 - 3.5.168 - 3.5.169 - 3.5.170 - 3.5.171 - 3.5.172 - 3.5.173 brca1_func_assay: code_size: 130755 commercial_warning: 'For commercial use, contact lstarita@uw.edu. ' data_size: 137390 data_sources: 2018.10.4: null 2018.12.20: null 2018.12.26: null 2019.03.20: dbNSFP v4.0b1 2019.03.21: 2018.04.05 2019.05.13: 2018.04.05 2019.1.23: null 2019.1.231: dbNSFP v4.0b1 2019.2.6: dbNSFP v4.0b1 data_versions: 2018.10.4: 2018.10.4 2018.12.20: 2018.10.4 2018.12.26: 2018.10.4 2019.03.20: 2018.10.4 2019.03.21: 2018.10.4 2019.05.13: 2018.10.4 2019.1.23: 2018.10.4 2019.1.231: 2018.10.4 2019.2.6: 2018.10.4 datasource: 2018.04.05 description: Impact of BRCA1 missense variants on protein function as determined by multiplex homology-directed DNA repair assay developer: citation: Findlay, G.M., Daza, R.M., Martin, B., Zhang, M.D., Leith, A.P., Gasperini, M.J., Janizek, J.D., Huang, X., Starita, L.M., & Shendure, J. (2018). Accurate classification of BRCA1 variants with saturation genome editing. Nature, 1-6. email: support@cravat.us name: Lea Starita organization: Starita Lab website: http://staritalab.org/ groups: [] has_logo: true hidden: false latest_version: 2019.05.13 publish_time: 2019-03-23T20:11:20.673046+0000 requires: - wgbrca1_func_assay size: 268145 tags: - variants - cancer - functional studies title: BRCA1 Saturation Genome Editing Scores type: annotator versions: - 2018.10.4 - 2018.12.20 - 2018.12.26 - 2019.1.23 - 2019.1.231 - 2019.2.6 - 2019.03.20 - 2019.03.21 - 2019.05.13 cadd: code_size: 128977 commercial_warning: CADD scores are freely available for all non-commercial applications.If you are planning on using them in a commercial application, please obtain a license. data_size: 86595748694 data_sources: 1.0.0: v1.6 data_versions: 1.0.0: 1.0.0 datasource: v1.6 description: CADD is a tool for scoring the deleteriousness of single nucleotide variants in the human genome. developer: citation: 'Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M. CADD: predicting the deleteriousness of variants throughout the human genome. Nucleic Acids Res.2018 Oct 29. doi: 10.1093/nar/gky1016. PubMed PMID: 30371827.' email: support@cravat.us name: Martin Kircher organization: Shendure Lab, University of Washington website: https://cadd.gs.washington.edu/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-14T15:18:12.657184+0000 requires: - pytabix size: 86595877671 tags: - variant effect prediction title: CADD type: annotator versions: - 1.0.0 cadd_exome: code_size: 267092 commercial_warning: CADD scores are freely available for all non-commercial applications. If you are planning on using them in a commercial application, please obtain a license. data_size: 6811920384 data_sources: 1.6.0: '1.6' 1.6.1: '1.6' data_versions: 1.6.0: 1.6.0 1.6.1: 1.6.0 datasource: '1.6' description: CADD is a tool for scoring the deleteriousness of single nucleotide variants in the human genome. developer: citation: 'Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M. CADD: predicting the deleteriousness of variants throughout the human genome. Nucleic Acids Res. 2018 Oct 29. doi: 10.1093/nar/gky1016. PubMed PMID: 30371827.' email: support@cravat.us name: Martin Kircher organization: Shendure Lab, University of Washington website: https://cadd.gs.washington.edu/ groups: [] has_logo: true hidden: false latest_version: 1.6.1 publish_time: 2020-05-18T16:24:17.165379+0000 requires: null size: 6812187476 tags: - variant effect prediction title: CADD Exome type: annotator versions: - 1.6.0 - 1.6.1 cancer_genome_interpreter: code_size: 362317 commercial_warning: Freely available for non-commercial use. data_size: 198660 data_sources: 1.0.0: 2018.01.17 1.1.0: 2018.01.17 1.2.0: 2018.01.17 1.3.0: 2018.01.17 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 1.2.0: 1.2.0 1.3.0: 1.3.0 datasource: 2018.01.17 description: Flags validated oncogenic alterations and genomic biomarkers of drug response, while predicting cancer drivers among mutations of unknown significance. developer: citation: 'Tamborero, David, et al. "Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations." Genome medicine 10.1 (2018): 25.' email: support@cravat.us name: Global Alliance for Genomics and Health organization: Global Alliance for Genomics and Health website: https://www.cancergenomeinterpreter.org/biomarkers groups: [] has_logo: true hidden: false latest_version: 1.3.0 publish_time: 2020-11-10T20:38:36.004553+0000 requires: - wgcancer_genome_interpreter size: 560977 tags: - cancer - clinical relevance title: Cancer Genome Interpreter type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 - 1.3.0 cancer_hotspots: code_size: 43384 commercial_warning: null data_size: 223236 data_sources: 1.0.0: December 2017 1.1.0: December 2017 1.2.0: December 2017 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 1.2.0: 1.2.0 datasource: December 2017 description: A resource for statistically significant mutations in cancer. developer: citation: Chang et al., Accelerating discovery of functional mutant alleles in cancer. Cancer Discovery, 10.1158/2159-8290.CD-17-0321 (2017). email: support@cravat.us name: Memorial Sloan Kettering Cancer Center organization: Memorial Sloan Kettering Cancer Center website: https://www.cancerhotspots.org/ groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-08-17T15:24:05.845210+0000 requires: - wgcancer_hotspots size: 266620 tags: null title: Cancer Hotspots type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 cardioboost: code_size: 39440 commercial_warning: null data_size: 18155524 data_sources: 1.0.0: v2.1 data_versions: 1.0.0: 1.0.0 datasource: v2.1 description: Predicts pathogenicity of missense variants for inherited cardiac conditions developer: citation: Zhang, Xiaolei, et al. "Disease-specific variant pathogenicity prediction significantly improves variant interpretation in inherited cardiac conditions." bioRxiv (2020). email: support@cravat.us name: CardioBoost organization: CardioBoost website: https://www.cardiodb.org/cardioboost/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-24T17:53:28.536470+0000 requires: null size: 18194964 tags: - clinical relevance - variant effect prediction title: CardioBoost type: annotator versions: - 1.0.0 ccr: code_size: 85555 commercial_warning: null data_size: 7923716 data_sources: 1.0.0: December 2018 data_versions: 1.0.0: 1.0.0 datasource: December 2018 description: The constrained coding regions model (CCR) uses the Genome Aggregation Database to reveal regions of protein coding genes that are likely to be under potentially purifiying selection. developer: citation: Havrilla, J.M., Pedersen, B.S., Layer, R.M. & Quinlan, A.R. A map of constrained coding regions in the human genome. Nature Genetics (2018). doi:10.1038/s41588-018-0294-6 email: support@cravat.us name: James M. Havrilla organization: University of Utah website: https://s3.us-east-2.amazonaws.com/ccrs/ccr.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-05-06T18:51:38.290733+0000 requires: null size: 8009271 tags: null title: 'CCR: Constrained Coding Regions' type: annotator versions: - 1.0.0 ccre_screen: code_size: 278039 commercial_warning: null data_size: 77563908 data_sources: 1.0.0: 2019.1 1.0.1: 2019.1 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: 2019.1 description: SCREEN allows the user to explore Candidate cis-Regulatory Elements (cCREs) and investigate how these elements relate to other Encyclopedia annotations and raw ENCODE data. developer: citation: "ENCODE Project Consortium, Jill E. Moore, Michael J. Purcaro, Henry\ \ E. Pratt, Charles B. Epstein, Noam Shoresh, Jessika Adrian, et al. 2020. \u201C\ Expanded Encyclopaedias of DNA Elements in the Human and Mouse Genomes.\u201D\ \ Nature 583 (7818): 699\u2013710." email: support@cravat.us name: Weng Lab organization: UMass Med, ENCODE Data Analysis Center website: https://screen.wenglab.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-10-15T19:40:16.488986+0000 requires: - wgccre_screen size: 77841947 tags: - non coding title: Candidate cis-Regulatory Elements by ENCODE (SCREEN) type: annotator versions: - 1.0.0 - 1.0.1 cgc: code_size: 153785 commercial_warning: For commercial use, contact cosmic@sanger.ac.uk data_size: 73728 data_sources: 85.0.0: v85 85.0.1: v85 85.0.10: '2019-03-23' 85.0.11: '2019-03-23' 85.0.12: '2019-03-23' 85.0.3: v85 85.0.5: v85 85.0.6: v85 85.0.7: v85 85.0.8: v85 85.0.9: v85 data_versions: 85.0.0: 85.0.0 85.0.1: 85.0.0 85.0.10: 85.0.10 85.0.11: 85.0.10 85.0.12: 85.0.10 85.0.3: 85.0.3 85.0.5: 85.0.3 85.0.6: 85.0.3 85.0.7: 85.0.3 85.0.8: 85.0.3 85.0.9: 85.0.3 datasource: '2019-03-23' description: Cancer Gene Census annotation developer: citation: Futreal, P.A., Coin, L.J., Marshall, M., Down, T., Hubbard, T.L., Wooster, R., Rahman, N., & Stratton, M.R. (2004). A census of human cancer genes. Nature Reviews Cancer, 4, 177-183. email: support@cravat.us name: Sanger Institute organization: Sanger Institute website: https://cancer.sanger.ac.uk/census groups: [] has_logo: true hidden: false latest_version: 85.0.12 publish_time: 2019-03-23T17:50:47.555923+0000 requires: - wgcgc size: 227513 tags: - genes - cancer title: Cancer Gene Census type: annotator versions: - 85.0.0 - 85.0.1 - 85.0.3 - 85.0.5 - 85.0.6 - 85.0.7 - 85.0.8 - 85.0.9 - 85.0.10 - 85.0.11 - 85.0.12 cgd: code_size: 112111 commercial_warning: null data_size: 612356 data_sources: 1.0.0: 2021.02.09 1.0.1: 2021.02.09 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: 2021.02.09 description: A manually curated database of conditions with known genetic causes, focusing on medically significant genetic data with available interventions. developer: citation: Solomon BD, Nguyen AD, Bear KA, Wolfsberg TG. Clinical Genomic Database. Proc Natl Acad Sci U S A. 2013 May 21. [Epub ahead of print] [PubMed]. email: support@cravat.us name: NIH organization: NIH website: https://research.nhgri.nih.gov/CGD/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-06-10T18:21:10.186851+0000 requires: - wgcgd size: 724467 tags: - genes title: 'CGD: Clinical Genomic Database' type: annotator versions: - 1.0.0 - 1.0.1 cgl: code_size: 464200 commercial_warning: null data_size: 14340 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: v2013.03.29 1.0.4: v2013.03.29 1.0.5: v2013.03.29 1.0.6: v2013.03.29 1.0.7: v2013.03.29 1.0.8: v2013.03.29 1.0.9: v2013.03.29 1.1.0: v2013.03.29 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.7: 1.0.7 1.0.8: 1.0.7 1.0.9: 1.0.7 1.1.0: 1.1.0 datasource: v2013.03.29 description: Oncogenes and tumor supressor genes from Vogelstein et al. 2013 developer: citation: Vogelstein, B., Papadopoulos, N., Velculescu, V.E., Zhou, S., Diaz, L.A., & Kinzler, K.W. (2013). Cancer genome landscapes. Science, 339 6127, 1546-58. email: support@cravat.us name: Bert Vogelstein organization: Johns Hopkins University website: http://science.sciencemag.org/content/339/6127/1546 groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2019-01-30T18:35:22.551632+0000 requires: null size: 478540 tags: - genes - cancer title: Cancer Gene Landscape type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.9 - 1.1.0 chasmplus: code_size: 107015 commercial_warning: Freely available for non-commercial use. data_size: 8040433475 data_sources: 1.0.1: null 1.0.10: v1.0.0 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: v1.0.0 1.0.6: v1.0.0 1.0.7: v1.0.0 1.0.8: v1.0.0 1.0.9: v1.0.0 1.1.0: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.2: 1.0.1 1.0.3: 1.0.1 1.0.4: 1.0.1 1.0.5: 1.0.1 1.0.6: 1.0.1 1.0.7: 1.0.1 1.0.8: 1.0.1 1.0.9: 1.0.1 1.1.0: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-01-30T18:35:31.269709+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8040540490 tags: - cancer - variant effect prediction title: CHASMplus type: annotator versions: - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.9 - 1.0.10 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_ACC: code_size: 31105 commercial_warning: null data_size: 8037283752 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:21:24.414464+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037314857 tags: - cancer - variant effect prediction title: CHASMplus ACC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_ACC_mski: code_size: 32249 commercial_warning: null data_size: 89509 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.184277+0000 requires: - chasmplus_mski_group - chasmplus_ACC size: 121758 tags: - cancer - variant effect prediction title: CHASMplus ACC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_BLCA: code_size: 28202 commercial_warning: null data_size: 8037357449 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:21:42.309414+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037385651 tags: - cancer - variant effect prediction title: CHASMplus BLCA type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_BLCA_mski: code_size: 29350 commercial_warning: null data_size: 141217 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.268897+0000 requires: - chasmplus_mski_group - chasmplus_BLCA size: 170567 tags: - cancer - variant effect prediction title: CHASMplus BLCA MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_BRCA: code_size: 28571 commercial_warning: null data_size: 8037136915 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:21:59.511102+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037165486 tags: - cancer - variant effect prediction title: CHASMplus BRCA type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_BRCA_mski: code_size: 29719 commercial_warning: null data_size: 121501 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.353857+0000 requires: - chasmplus_mski_group - chasmplus_BRCA size: 151220 tags: - cancer - variant effect prediction title: CHASMplus BRCA MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_CESC: code_size: 29093 commercial_warning: null data_size: 8037053864 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:22:16.689409+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037082957 tags: - cancer - variant effect prediction title: CHASMplus CESC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_CESC_mski: code_size: 30224 commercial_warning: null data_size: 154467 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.438565+0000 requires: - chasmplus_mski_group - chasmplus_CESC size: 184691 tags: - cancer - variant effect prediction title: CHASMplus CESC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_CHOL: code_size: 27919 commercial_warning: null data_size: 8037808854 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:22:33.864305+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037836773 tags: - cancer - variant effect prediction title: CHASMplus CHOL type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_CHOL_mski: code_size: 29061 commercial_warning: null data_size: 74240 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.523172+0000 requires: - chasmplus_mski_group - chasmplus_CHOL size: 103301 tags: - cancer - variant effect prediction title: CHASMplus CHOL MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_COAD: code_size: 30859 commercial_warning: null data_size: 8036642141 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:22:51.319119+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036673000 tags: - cancer - variant effect prediction title: CHASMplus COAD type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_COAD_mski: code_size: 32012 commercial_warning: null data_size: 147896 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.608525+0000 requires: - chasmplus_mski_group - chasmplus_COAD size: 179908 tags: - cancer - variant effect prediction title: CHASMplus COAD MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_DLBC: code_size: 28654 commercial_warning: null data_size: 8037176419 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:23:09.674093+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037205073 tags: - cancer - variant effect prediction title: CHASMplus DLBC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_DLBC_mski: code_size: 29768 commercial_warning: null data_size: 101345 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.693437+0000 requires: - chasmplus_mski_group - chasmplus_DLBC size: 131113 tags: - cancer - variant effect prediction title: CHASMplus DLBC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_ESCA: code_size: 27239 commercial_warning: null data_size: 8037437057 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:23:26.881833+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037464296 tags: - cancer - variant effect prediction title: CHASMplus ESCA type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_ESCA_mski: code_size: 28383 commercial_warning: null data_size: 142662 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.778260+0000 requires: - chasmplus_mski_group - chasmplus_ESCA size: 171045 tags: - cancer - variant effect prediction title: CHASMplus ESCA MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_GBM: code_size: 30191 commercial_warning: null data_size: 8036240284 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:23:44.080965+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036270475 tags: - cancer - variant effect prediction title: CHASMplus GBM type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_GBM_mski: code_size: 31332 commercial_warning: null data_size: 146652 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.862920+0000 requires: - chasmplus_mski_group - chasmplus_GBM size: 177984 tags: - cancer - variant effect prediction title: CHASMplus GBM MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_HNSC: code_size: 31476 commercial_warning: null data_size: 8035834500 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:24:01.748559+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8035865976 tags: - cancer - variant effect prediction title: CHASMplus HNSC type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_HNSC_mski: code_size: 32636 commercial_warning: null data_size: 156300 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:50.947145+0000 requires: - chasmplus_mski_group - chasmplus_HNSC size: 188936 tags: - cancer - variant effect prediction title: CHASMplus HNSC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_KICH: code_size: 29981 commercial_warning: null data_size: 8037696338 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:24:18.962661+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037726319 tags: - cancer - variant effect prediction title: CHASMplus KICH type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_KICH_mski: code_size: 31135 commercial_warning: null data_size: 98797 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:51.032175+0000 requires: - chasmplus_mski_group - chasmplus_KICH size: 129932 tags: - cancer - variant effect prediction title: CHASMplus KICH MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_KIRC: code_size: 30403 commercial_warning: null data_size: 8036923777 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:28:30.820328+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036954180 tags: - cancer - variant effect prediction title: CHASMplus KIRC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_KIRC_mski: code_size: 31414 commercial_warning: null data_size: 116061 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:51.117231+0000 requires: - chasmplus_mski_group - chasmplus_KIRC size: 147475 tags: - cancer - variant effect prediction title: CHASMplus KIRC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_KIRP: code_size: 30468 commercial_warning: null data_size: 8037201556 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:24:36.235317+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037232024 tags: - cancer - variant effect prediction title: CHASMplus KIRP type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_KIRP_mski: code_size: 31587 commercial_warning: null data_size: 131866 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:55:51.202238+0000 requires: - chasmplus_mski_group - chasmplus_KIRP size: 163453 tags: - cancer - variant effect prediction title: CHASMplus KIRP MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_LAML: code_size: 28264 commercial_warning: null data_size: 8037264659 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:24:53.891396+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037292923 tags: - cancer - variant effect prediction title: CHASMplus LAML type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_LAML_mski: code_size: 29360 commercial_warning: null data_size: 95577 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.018976+0000 requires: - chasmplus_mski_group - chasmplus_LAML size: 124937 tags: - cancer - variant effect prediction title: CHASMplus LAML MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_LGG: code_size: 30175 commercial_warning: null data_size: 8036810614 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:25:11.448773+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036840789 tags: - cancer - variant effect prediction title: CHASMplus LGG type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_LGG_mski: code_size: 31329 commercial_warning: null data_size: 129245 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.107624+0000 requires: - chasmplus_mski_group - chasmplus_LGG size: 160574 tags: - cancer - variant effect prediction title: CHASMplus LGG MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_LIHC: code_size: 29044 commercial_warning: null data_size: 8036551421 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:28:48.594286+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036580465 tags: - cancer - variant effect prediction title: CHASMplus LIHC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_LIHC_mski: code_size: 30193 commercial_warning: null data_size: 137803 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.198017+0000 requires: - chasmplus_mski_group - chasmplus_LIHC size: 167996 tags: - cancer - variant effect prediction title: CHASMplus LIHC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_LUAD: code_size: 29787 commercial_warning: null data_size: 8036329847 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:29:05.627192+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036359634 tags: - cancer - variant effect prediction title: CHASMplus LUAD type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_LUAD_mski: code_size: 30935 commercial_warning: null data_size: 237014 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.286218+0000 requires: - chasmplus_mski_group - chasmplus_LUAD size: 267949 tags: - cancer - variant effect prediction title: CHASMplus LUAD MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_LUSC: code_size: 29946 commercial_warning: null data_size: 8036621615 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:29:22.870408+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036651561 tags: - cancer - variant effect prediction title: CHASMplus LUSC type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_LUSC_mski: code_size: 31105 commercial_warning: null data_size: 161313 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.373913+0000 requires: - chasmplus_mski_group - chasmplus_LUSC size: 192418 tags: - cancer - variant effect prediction title: CHASMplus LUSC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_MESO: code_size: 33355 commercial_warning: null data_size: 8037316310 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:29:39.953342+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037349665 tags: - cancer - variant effect prediction title: CHASMplus MESO type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_MESO_mski: code_size: 34518 commercial_warning: null data_size: 145118 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.460872+0000 requires: - chasmplus_mski_group - chasmplus_MESO size: 179636 tags: - cancer - variant effect prediction title: CHASMplus MESO MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_OV: code_size: 28693 commercial_warning: null data_size: 8037071744 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:29:57.575185+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037100437 tags: - cancer - variant effect prediction title: CHASMplus OV type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_OV_mski: code_size: 29804 commercial_warning: null data_size: 110232 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.547877+0000 requires: - chasmplus_mski_group - chasmplus_OV size: 140036 tags: - cancer - variant effect prediction title: CHASMplus OV MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_PAAD: code_size: 29781 commercial_warning: null data_size: 8037643421 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:30:14.724908+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037673202 tags: - cancer - variant effect prediction title: CHASMplus PAAD type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_PAAD_mski: code_size: 30925 commercial_warning: null data_size: 148324 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.633978+0000 requires: - chasmplus_mski_group - chasmplus_PAAD size: 179249 tags: - cancer - variant effect prediction title: CHASMplus PAAD MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_PCPG: code_size: 30299 commercial_warning: null data_size: 8037188164 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:30:48.951257+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037218463 tags: - cancer - variant effect prediction title: CHASMplus PCPG type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_PCPG_mski: code_size: 31443 commercial_warning: null data_size: 119444 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.720180+0000 requires: - chasmplus_mski_group - chasmplus_PCPG size: 150887 tags: - cancer - variant effect prediction title: CHASMplus PCPG MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_PRAD: code_size: 29198 commercial_warning: null data_size: 8036811406 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:31:06.661266+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036840604 tags: - cancer - variant effect prediction title: CHASMplus PRAD type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_PRAD_mski: code_size: 30349 commercial_warning: null data_size: 136578 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.811292+0000 requires: - chasmplus_mski_group - chasmplus_PRAD size: 166927 tags: - cancer - variant effect prediction title: CHASMplus PRAD MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_READ: code_size: 30873 commercial_warning: null data_size: 8036909675 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:31:23.976942+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036940548 tags: - cancer - variant effect prediction title: CHASMplus READ type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_READ_mski: code_size: 32041 commercial_warning: null data_size: 132802 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.897100+0000 requires: - chasmplus_mski_group - chasmplus_READ size: 164843 tags: - cancer - variant effect prediction title: CHASMplus READ MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_SARC: code_size: 33001 commercial_warning: null data_size: 8036919336 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:31:41.144509+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036952337 tags: - cancer - variant effect prediction title: CHASMplus SARC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_SARC_mski: code_size: 34159 commercial_warning: null data_size: 107856 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:41.983461+0000 requires: - chasmplus_mski_group - chasmplus_SARC size: 142015 tags: - cancer - variant effect prediction title: CHASMplus SARC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_SKCM: code_size: 34303 commercial_warning: null data_size: 8036679474 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:31:58.714812+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036713777 tags: - cancer - variant effect prediction title: CHASMplus SKCM type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_SKCM_mski: code_size: 35363 commercial_warning: null data_size: 136050 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:42.069732+0000 requires: - chasmplus_mski_group - chasmplus_SKCM size: 171413 tags: - cancer - variant effect prediction title: CHASMplus SKCM MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_STAD: code_size: 27250 commercial_warning: null data_size: 8036195924 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:32:16.266425+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036223174 tags: - cancer - variant effect prediction title: CHASMplus STAD type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_STAD_mski: code_size: 28389 commercial_warning: null data_size: 131103 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:56:42.154397+0000 requires: - chasmplus_mski_group - chasmplus_STAD size: 159492 tags: - cancer - variant effect prediction title: CHASMplus STAD MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_TGCT: code_size: 29282 commercial_warning: null data_size: 8037056966 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:32:33.420940+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037086248 tags: - cancer - variant effect prediction title: CHASMplus TGCT type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_TGCT_mski: code_size: 30441 commercial_warning: null data_size: 70726 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.223494+0000 requires: - chasmplus_mski_group - chasmplus_TGCT size: 101167 tags: - cancer - variant effect prediction title: CHASMplus TGCT MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_THCA: code_size: 25390 commercial_warning: null data_size: 8036843336 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.2.0: 1.0.0 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: Tokheim, C., Karchin, R. (2018). CHASMplus reveals the scope of somatic missense mutations driving human cancers. bioRxiv, 313296. email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:32:50.659466+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036868726 tags: - cancer - variant effect prediction title: CHASMplus THCA type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.2.0 chasmplus_THCA_mski: code_size: 30882 commercial_warning: null data_size: 0 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: null 1.2.0: null datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.310134+0000 requires: - chasmplus_mski_group - chasmplus_THCA size: 30882 tags: - cancer - variant effect prediction title: CHASMplus THCA MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_THYM: code_size: 29135 commercial_warning: null data_size: 8037518076 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:33:07.928708+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037547211 tags: - cancer - variant effect prediction title: CHASMplus THYM type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_THYM_mski: code_size: 30272 commercial_warning: null data_size: 62613 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.394968+0000 requires: - chasmplus_mski_group - chasmplus_THYM size: 92885 tags: - cancer - variant effect prediction title: CHASMplus THYM MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_UCEC: code_size: 28602 commercial_warning: null data_size: 8036360279 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:33:25.575306+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8036388881 tags: - cancer - variant effect prediction title: CHASMplus UCEC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_UCEC_mski: code_size: 29756 commercial_warning: null data_size: 210309 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.479160+0000 requires: - chasmplus_mski_group - chasmplus_UCEC size: 240065 tags: - cancer - variant effect prediction title: CHASMplus UCEC MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_UCS: code_size: 28265 commercial_warning: null data_size: 8037627059 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:33:42.780251+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037655324 tags: - cancer - variant effect prediction title: CHASMplus UCS type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_UCS_mski: code_size: 29426 commercial_warning: null data_size: 160616 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.563008+0000 requires: - chasmplus_mski_group - chasmplus_UCS size: 190042 tags: - cancer - variant effect prediction title: CHASMplus UCS MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_UVM: code_size: 27318 commercial_warning: null data_size: 8037366925 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 1.1.1: v1.0.0 1.1.2: v1.0.0 1.1.3: v1.0.0 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 1.1.1: 1.0.1 1.1.2: 1.0.1 1.1.3: 1.0.1 1.1.4: 1.0.1 1.2.0: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2019-05-31T03:34:00.072936+0000 requires: - wgndexchasmplussummary - wgchasmplus - chasmplus_group size: 8037394243 tags: - cancer - variant effect prediction title: CHASMplus UVM type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.2.0 chasmplus_UVM_mski: code_size: 28478 commercial_warning: null data_size: 100778 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.673850+0000 requires: - chasmplus_mski_group - chasmplus_UVM size: 129256 tags: - cancer - variant effect prediction title: CHASMplus UVM MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_group: code_size: 76966 commercial_warning: null data_size: 0 data_sources: 1.0.10: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.10: null 1.2.0: null datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: Tokheim, C., Karchin, R. (2018). CHASMplus reveals the scope of somatic missense mutations driving human cancers. bioRxiv, 313296. email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.696802+0000 requires: null size: 76966 tags: - cancer - variant effect prediction title: CHASMplus type: group versions: - 1.0.10 - 1.2.0 chasmplus_mski: code_size: 99821 commercial_warning: null data_size: 175545 data_sources: 1.1.4: v1.0.0 1.2.0: v1.0.0 data_versions: 1.1.4: 1.1.4 1.2.0: 1.1.4 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_mski_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.743160+0000 requires: - chasmplus_mski_group - chasmplus size: 275366 tags: - cancer - variant effect prediction title: CHASMplus MSK-IMPACT type: annotator versions: - 1.1.4 - 1.2.0 chasmplus_mski_group: code_size: 77116 commercial_warning: Freely available for non-commercial use. data_size: 0 data_sources: 1.0.10: v1.0.0 1.2.0: v1.0.0 data_versions: 1.0.10: null 1.2.0: null datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: 'Tokheim C, Karchin R. CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers. Cell Syst. 2019. doi: 10.1016/j.cels.2019.05.005. PubMed PMID: 31202631.' email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T22:57:32.764237+0000 requires: null size: 77116 tags: - cancer - variant effect prediction title: CHASMplus MSK-IMPACT type: group versions: - 1.0.10 - 1.2.0 civic: code_size: 52746 commercial_warning: null data_size: 0 data_sources: 0.0.1: null 1.0.1: null 1.0.10: Jan 2019 1.0.11: Jan 2019 1.0.12: Jan 2019 1.0.13: Jan 2019 1.0.14: Jan 2019 1.0.15: Jan 2019 1.0.16: Jan 2019 1.0.17: Latest Available 1.0.18: Latest Available 1.0.2: null 1.0.3: null 1.0.4: Jan 2019 1.0.5: Jan 2019 1.0.7: Jan 2019 1.0.8: Jan 2019 1.0.9: Jan 2019 data_versions: 0.0.1: null 1.0.1: null 1.0.10: null 1.0.11: null 1.0.12: null 1.0.13: null 1.0.14: null 1.0.15: null 1.0.16: null 1.0.17: null 1.0.18: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.7: null 1.0.8: null 1.0.9: null datasource: Latest Available description: Provides descriptions and linkouts to CIViC developer: citation: Griffith, M., Spies, N.C., Krysiak, K., et al. (2017). CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics, 49(2):170-174. email: support@cravat.us name: The McDonnell Genome Institute at Washington University School of Medicine organization: The McDonnell Genome Institute at Washington University School of Medicine website: https://civicdb.org groups: [] has_logo: true hidden: false latest_version: 1.0.18 publish_time: 2022-11-07T18:44:01.171977+0000 requires: - wgcivic size: 52746 tags: - variants - clinical relevance - cancer - literature title: CIViC type: annotator versions: - 0.0.1 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.7 - 1.0.8 - 1.0.9 - 1.0.10 - 1.0.11 - 1.0.12 - 1.0.13 - 1.0.14 - 1.0.15 - 1.0.16 - 1.0.17 - 1.0.18 civic_gene: code_size: 54158 commercial_warning: null data_size: 0 data_sources: 0.0.1: null 0.0.2: null 0.0.3: null 0.0.4: Jan 2019 0.0.5: Jan 2019 1.0.10: Jan 2019 1.0.6: Jan 2019 1.0.7: Jan 2019 1.0.8: Jan 2019 1.0.9: Jan 2019 data_versions: 0.0.1: null 0.0.2: null 0.0.3: null 0.0.4: null 0.0.5: null 1.0.10: null 1.0.6: null 1.0.7: null 1.0.8: null 1.0.9: null datasource: Jan 2019 description: Provides descriptions and linkouts to CIViC developer: citation: Griffith, M., Spies, N.C., Krysiak, K., et al. (2017). CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics, 49(2):170-174. email: support@cravat.us name: The McDonnell Genome Institute at Washington University School of Medicine organization: The McDonnell Genome Institute at Washington University School of Medicine website: https://civicdb.org groups: [] has_logo: true hidden: false latest_version: 1.0.10 publish_time: 2019-01-30T18:35:50.003914+0000 requires: - wgcivic_gene size: 54158 tags: - genes - clinical relevance - cancer title: CIViC Gene type: annotator versions: - 0.0.1 - 0.0.2 - 0.0.3 - 0.0.4 - 0.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.9 - 1.0.10 clingen: code_size: 15019 commercial_warning: null data_size: 173825 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: null description: ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to building a central resource that defines the clinical relevance of genes and variants for use in precision medicine and research. developer: citation: 'Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R, Seifert BA, Sneddon TP, Wright MW, Milko LV, Cherry JM, Giovanni MA, Murray MF, O''Daniel JM, Ramos EM, Santani AB, Scott AF, Plon SE, Rehm HL, Martin CL, Berg JS. Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource. Am J Hum Genet. 2017 Jun 1;100(6):895-906. doi: 10.1016/j.ajhg.2017.04.015. Epub 2017 May 25. PubMed PMID: 28552198; PubMed Central PMCID: PMC5473734.' email: clingen@clinicalgenome.org name: Katrina Goddard organization: National Institutes of Health website: https://clinicalgenome.org groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-08-21T18:36:56.505747+0000 requires: - wgclingen size: 188844 tags: - genes - clinical relevance title: ClinGen Gene type: annotator versions: - 1.0.0 - 1.0.1 clinpred: code_size: 135695 commercial_warning: null data_size: 3788716036 data_sources: 1.0.0: October 2018 data_versions: 1.0.0: 1.0.0 datasource: October 2018 description: Prediction tool to identify disease-relevant nonsynonymous single nucleotide variants. developer: citation: "Alirezaie N, Kernohan KD, Hartley T, Majewski J, Hocking TD. \u201C\ ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide\ \ Variants.\u201D American Journal of Human 2018 Oct 4;103(4):474-483. PMID:30220433" email: support@cravat.us name: Najmeh Alirezaie and Jacek Majewski organization: McGill University website: https://sites.google.com/site/clinpred/home groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-03-03T18:47:32.430896+0000 requires: null size: 3788851731 tags: - variants - variant effect prediction - clinical relevance title: ClinPred type: annotator versions: - 1.0.0 clinvar: code_size: 756301 commercial_warning: null data_size: 381528068 data_sources: 2018.04.06: 2018.04.06 2018.04.061: 2018.04.06 2018.04.062: 2018.04.06 2019.01.021: 2019.01.02 2019.01.022: 2019.01.02 2019.01.024: 2019.01.02 2019.01.025: 2019.01.02 2019.02.006: 2019.01.02 2019.03.20: 2019.01.02 2019.03.26: 2019.01.02 2019.03.261: 2019.01.02 2019.05.13: 2019.01.02 2019.08.02: 2019.01.02 2019.08.23: 2019.01.02 2020.02.11: 2020.02.11 2020.02.11.1: 2020.02.11 2020.11.02: 2020.02.11 2021.01.12: 2021.01.11 2021.02.04: 2021.02.04 2021.03.03: 2021.03.03 2021.04.01: 2021.04.01 2021.05.01: 2021.05.01 2021.06.01: 2021.06.01 2021.08.01: 2021.08.01 2021.09.01: 2021.09.01 2021.10.01: 2021.10.01 2022.03.06: 2022.03.06 2022.06.14: 2022.06.14 2022.11.14: 2023.01.01 2023.02.01: 2023.02.01 data_versions: 2018.04.06: 2018.04.06 2018.04.061: 2018.04.061 2018.04.062: 2018.04.061 2019.01.021: 2018.04.061 2019.01.022: 2019.01.022 2019.01.024: 2019.01.022 2019.01.025: 2019.01.022 2019.02.006: 2019.01.022 2019.03.20: 2019.01.022 2019.03.26: 2019.01.022 2019.03.261: 2019.01.022 2019.05.13: 2019.01.022 2019.08.02: 2019.01.022 2019.08.23: 2019.01.022 2020.02.11: 2020.02.11 2020.02.11.1: 2020.02.11 2020.11.02: 2020.11.02 2021.01.12: 2021.01.12 2021.02.04: 2021.02.04 2021.03.03: 2021.03.03 2021.04.01: 2021.04.01 2021.05.01: 2021.05.01 2021.06.01: 2021.06.01 2021.08.01: 2021.08.01 2021.09.01: 2021.09.01 2021.10.01: 2021.10.01 2022.03.06: 2022.03.06 2022.06.14: 2022.06.14 2022.11.14: 2022.11.14 2023.02.01: 2023.02.01 datasource: 2023.02.01 description: ClinVar is an archive of reports of the relationships among human variations and phenotypes, with supporting evidence. developer: citation: 'Landrum, M.J., Lee, J.M., Benson, M., et al. (2016). ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Research, 44(D1):D862-8.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/clinvar/ groups: [] has_logo: true hidden: false latest_version: 2023.02.01 publish_time: 2023-02-03T14:47:16.942051+0000 requires: - wgclinvar size: 382284369 tags: - variants - clinical relevance - literature title: ClinVar type: annotator versions: - 2018.04.06 - 2018.04.061 - 2018.04.062 - 2019.01.021 - 2019.01.022 - 2019.01.024 - 2019.01.025 - 2019.02.006 - 2019.03.20 - 2019.03.26 - 2019.03.261 - 2019.05.13 - 2019.08.02 - 2019.08.23 - 2020.02.11 - 2020.02.11.1 - 2020.11.02 - 2021.01.12 - 2021.02.04 - 2021.03.03 - 2021.04.01 - 2021.05.01 - 2021.06.01 - 2021.08.01 - 2021.09.01 - 2021.10.01 - 2022.03.06 - 2022.06.14 - 2022.11.14 - 2023.02.01 clinvar_acmg: code_size: 103279 commercial_warning: null data_size: 84217856 data_sources: 2020.10.05: 2020.10.05 2021.01.13: 2021.01.13 2021.02.04: 2021.02.04 2021.03.03: 2021.03.03 2021.04.01: 2021.04.01 2021.05.01: 2021.05.01 2021.06.01: 2021.06.01 2021.08.01: 2021.08.01 2021.09.01: 2021.09.01 2021.10.01: 2021.10.01 2022.11.01: 2022.11.01 2022.12.01: 2022.12.01 2023.01.01: 2023.01.01 2023.02.01: 2023.02.01 data_versions: 2020.10.05: 2020.10.05 2021.01.13: 2021.01.13 2021.02.04: 2021.02.04 2021.03.03: 2021.03.03 2021.04.01: 2021.04.01 2021.05.01: 2021.05.01 2021.06.01: 2021.06.01 2021.08.01: 2021.08.01 2021.09.01: 2021.09.01 2021.10.01: 2021.10.01 2022.11.01: 2022.11.01 2022.12.01: 2022.12.01 2023.01.01: 2023.01.01 2023.02.01: 2023.02.01 datasource: 2023.02.01 description: ACMG PS1 and PM5 pathogenicity prediction based on ClinVar developer: citation: 'Landrum, M.J., Lee, J.M., Benson, M., et al. (2016). ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Research, 44(D1):D862-8.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/clinvar/ groups: [] has_logo: true hidden: false latest_version: 2023.02.01 publish_time: 2023-02-03T14:48:50.428171+0000 requires: null size: 84321135 tags: - variants - clinical relevance - literature title: ClinVar ACMG type: annotator versions: - 2020.10.05 - 2021.01.13 - 2021.02.04 - 2021.03.03 - 2021.04.01 - 2021.05.01 - 2021.06.01 - 2021.08.01 - 2021.09.01 - 2021.10.01 - 2022.11.01 - 2022.12.01 - 2023.01.01 - 2023.02.01 cosmic: code_size: 2646267 commercial_warning: For commercial use, contact cosmic@sanger.ac.uk data_size: 1254268928 data_sources: 85.0.0: v85 85.0.1: v85 85.0.11: v85 85.0.12: v85 85.0.13: v85 85.0.14: v85 85.0.15: v85 85.0.2: v85 85.0.3: v85 85.0.4: v85 85.0.5: v85 85.0.6: v85 85.0.7: v85 85.0.8: v85 85.0.9: v85 91.0.0: v91 data_versions: 85.0.0: 85.0.0 85.0.1: 85.0.0 85.0.11: 85.0.0 85.0.12: 85.0.0 85.0.13: 85.0.0 85.0.14: 85.0.0 85.0.15: 85.0.0 85.0.2: 85.0.0 85.0.3: 85.0.0 85.0.4: 85.0.0 85.0.5: 85.0.0 85.0.6: 85.0.0 85.0.7: 85.0.0 85.0.8: 85.0.0 85.0.9: 85.0.0 91.0.0: 91.0.0 datasource: v91 description: Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. developer: citation: 'Forbes, S.A., Beare, D., Boutselakis, H., et al. (2017). COSMIC: somatic cancer genetics at high-resolution. Nucleic Acids Research, 45(D1):D777-D783.' email: support@cravat.us name: Sanger Institute organization: Sanger Institute website: https://cancer.sanger.ac.uk/cosmic groups: [] has_logo: true hidden: false latest_version: 91.0.0 publish_time: 2020-08-21T18:38:38.757697+0000 requires: - wgcosmic size: 1256915195 tags: - variants - genes title: COSMIC type: annotator versions: - 85.0.0 - 85.0.1 - 85.0.2 - 85.0.3 - 85.0.4 - 85.0.5 - 85.0.6 - 85.0.7 - 85.0.8 - 85.0.9 - 85.0.11 - 85.0.12 - 85.0.13 - 85.0.14 - 85.0.15 - 91.0.0 cosmic_gene: code_size: 2706190 commercial_warning: 'For commercial use, contact cosmic@sanger.ac.uk ' data_size: 127188992 data_sources: 85.0.0: v85 85.0.1: v85 85.0.2: v85 85.0.3: v85 85.0.4: v85 85.0.5: v85 85.0.6: v85 91.0.0: v91 data_versions: 85.0.0: 85.0.0 85.0.1: 85.0.0 85.0.2: 85.0.2 85.0.3: 85.0.3 85.0.4: 85.0.3 85.0.5: 85.0.3 85.0.6: 85.0.3 91.0.0: 91.0.0 datasource: v91 description: Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. developer: citation: "Simon A. Forbes et al; COSMIC: somatic cancer genetics at high-resolution,\ \ Nucleic Acids Research, Volume 45, Issue D1, 4 January 2017, Pages D777\u2013\ D783, https://doi.org/10.1093/nar/gkw1121" email: support@cravat.us name: Sanger Institute organization: Sanger Institute website: https://cancer.sanger.ac.uk/cosmic groups: [] has_logo: true hidden: false latest_version: 91.0.0 publish_time: 2020-08-21T18:39:30.060400+0000 requires: - wgcosmic_gene size: 129895182 tags: - genes - cancer title: COSMIC Gene type: annotator versions: - 85.0.0 - 85.0.1 - 85.0.2 - 85.0.3 - 85.0.4 - 85.0.5 - 85.0.6 - 91.0.0 cravat-converter: code_size: 11917 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.1.0: null 1.1.1: null 1.1.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.1.0: null 1.1.1: null 1.1.2: null datasource: null description: File converter for standard cravat input developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.2 publish_time: '2018-12-10T16:51:10.000000' requires: null size: 11917 tags: null title: Cravat Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.1.0 - 1.1.1 - 1.1.2 cscape: code_size: 56579 commercial_warning: null data_size: 59852766222 data_sources: 1.0.0: 2017 data_versions: 1.0.0: 1.0.0 datasource: 2017 description: CScape predicts the oncogenic status (disease-driver or neutral) of somatic point mutations in coding and non coding region of the cancer genome. developer: citation: 'Rogers MF, Shihab H, Gaunt TR, Campbell C (2017). CScape: a tool for predicting oncogenic single-point mutations in the cancer genome. Nature Scientific Reports' email: suppor@cravat.us name: '' organization: University of Bristol Integrative Epidemiology Unit website: http://cscape.biocompute.org.uk/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-04-27T15:41:23.202196+0000 requires: null size: 59852822801 tags: - variant effect prediction - cancer - non coding title: CScape type: annotator versions: - 1.0.0 cscape_coding: code_size: 205021 commercial_warning: null data_size: 5212235780 data_sources: 1.0.0: 2017 data_versions: 1.0.0: 1.0.0 datasource: 2017 description: CScape predicts the oncogenic status (disease-driver or neutral) of somatic point mutations in the coding region of the cancer genome. developer: citation: 'Rogers MF, Shihab H, Gaunt TR, Campbell C (2017). CScape: a tool for predicting oncogenic single-point mutations in the cancer genome. Nature Scientific Reports' email: suppor@cravat.us name: '' organization: University of Bristol Integrative Epidemiology Unit website: http://cscape.biocompute.org.uk/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-04-27T15:42:34.492412+0000 requires: null size: 5212440801 tags: - variant effect prediction - cancer title: CScape Coding type: annotator versions: - 1.0.0 csvreporter: code_size: 12541 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.0.7: null 1.0.8: null 1.0.9: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.0.7: null 1.0.8: null 1.0.9: null datasource: null description: CSV format text file reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.9 publish_time: 2019-06-12T17:11:21.008048+0000 requires: null size: 12541 tags: - reporters title: CSV Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.4 - 1.0.7 - 1.0.8 - 1.0.9 cvdkp: code_size: 236265 commercial_warning: null data_size: 2467424260 data_sources: 1.0.0: 27 March 2019 data_versions: 1.0.0: 1.0.0 datasource: 27 March 2019 description: Produces an effect weight for the variant in which disease it is found. Weights are assigned according to the strength of their association with disease risk. developer: citation: Cardiovascular Disease Knowledge Portal. 2020 July 14; http://www.kp4cd.org/dataset_downloads/mi email: support@cravat.us name: Broad Institute organization: Broad Institute website: http://www.kp4cd.org/dataset_downloads/mi groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-24T17:53:28.579333+0000 requires: null size: 2467660525 tags: - variants - clinical relevance title: Cardiovascular Disease Knowledge Portal type: annotator versions: - 1.0.0 dann: code_size: 547947 commercial_warning: null data_size: 109595992123 data_sources: 1.0.0: March 2015 1.0.1: March 2015 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: March 2015 description: A deep learning approach for annotating the pathogenicity of genetic variants. developer: citation: 'Quang, Daniel, Yifei Chen, and Xiaohui Xie. "DANN: a deep learning approach for annotating the pathogenicity of genetic variants." Bioinformatics 31.5 (2015): 761-763.' email: support@cravat.us name: Center for Complex Biological Systems, University of California organization: Center for Complex Biological Systems, University of California website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-06-09T22:28:46.996583+0000 requires: - pytabix size: 109596540070 tags: - variant effect prediction title: DANN type: annotator versions: - 1.0.0 - 1.0.1 dann_coding: code_size: 134360 commercial_warning: Freely available for non-commercial use. data_size: 4316903428 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: DANN is a functional prediction score retrained based on the training data of CADD using deep neural network. developer: citation: 'Quang, Daniel, Yifei Chen, and Xiaohui Xie. "DANN: a deep learning approach for annotating the pathogenicity of genetic variants." Bioinformatics 31.5 (2015): 761-763.' email: support@cravat.us name: Center for Complex Biological Systems, University of California organization: Center for Complex Biological Systems, University of California website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-11-10T20:40:26.316314+0000 requires: null size: 4317037788 tags: - variant effect prediction title: DANN Coding type: annotator versions: - 1.0.0 dbcid: code_size: 178338 commercial_warning: null data_size: 47108 data_sources: 1.0.0: v1.0 1.0.1: v1.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v1.0 description: The database of Cancer driver InDels (dbCID) is a highly curated database of driver indels (insertions and deletions) that are likely to engage in cancer development, progression, or therapy. developer: citation: "Yue, Zhenyu et al. \u201CdbCID: a manually curated resource for exploring\ \ the driver indels in human cancer.\u201D Briefings in bioinformatics vol.\ \ 20,5 (2019): 1925-1933. doi:10.1093/bib/bby059" email: support@cravat.us name: '' organization: AnHui University website: http://bioinfo.ahu.edu.cn:8080/dbCID groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-04-26T15:01:40.024228+0000 requires: null size: 225446 tags: - cancer title: 'dbCID: Database of Cancer Driver InDels' type: annotator versions: - 1.0.0 - 1.0.1 dbscsnv: code_size: 109393 commercial_warning: null data_size: 754368512 data_sources: 1.0.0: v1.1 1.1.0: v1.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: v1.1 description: A comprehensive database of all potential human SNVs within splicing consensus regions and their functional annotations. developer: citation: 'Jian, Xueqiu, Eric Boerwinkle, and Xiaoming Liu. "In silico prediction of splice-altering single nucleotide variants in the human genome." Nucleic acids research 42.22 (2014): 13534-13544.' email: support@cravat.us name: Xiaoming Liu organization: University of South Florida website: http://www.liulab.science/dbscsnv.html groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-09-15T20:18:47.460936+0000 requires: null size: 754477905 tags: - variant effect prediction title: dbscSNV type: annotator versions: - 1.0.0 - 1.1.0 dbsnp: code_size: 228028 commercial_warning: null data_size: 31868577796 data_sources: 151.0.0: null 151.0.1: null 151.0.2: v151 151.0.3: v151 151.0.4: v151 151.0.5: v151 151.0.6: v151 151.0.7: v151 151.0.8: v151 151.0.9: v151 154.0.0: v154 154.0.1: v154 154.0.2: v154 data_versions: 151.0.0: 151.0.0 151.0.1: 151.0.0 151.0.2: 151.0.0 151.0.3: 151.0.0 151.0.4: 151.0.0 151.0.5: 151.0.0 151.0.6: 151.0.0 151.0.7: 151.0.0 151.0.8: 151.0.0 151.0.9: 151.0.0 154.0.0: 154.0.0 154.0.1: 154.0.1 154.0.2: 154.0.1 datasource: v154 description: Comprehensive database of both single base nucleotide subsitutions and short deletion and insertion polymorphisms developer: citation: 'Sherry, S.T., Ward, M., Kholodov, M., Baker, J., Phan, L., Smigielski, E.M., & Sirotkin, K. (2001). dbSNP: the NCBI database of genetic variation. Nucleic acids research, 29 1, 308-11 .' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/projects/SNP/ groups: [] has_logo: true hidden: false latest_version: 154.0.2 publish_time: 2020-12-02T22:06:41.161845+0000 requires: null size: 31868805824 tags: - variants - literature title: dbSNP type: annotator versions: - 151.0.0 - 151.0.1 - 151.0.2 - 151.0.3 - 151.0.4 - 151.0.5 - 151.0.6 - 151.0.7 - 151.0.8 - 151.0.9 - 154.0.0 - 154.0.1 - 154.0.2 dbsnp-converter: code_size: 25124 commercial_warning: null data_size: 30397822980 data_sources: 1.0.0: null 1.0.1: null 1.0.2: '153' 1.1.0: '153' 1.1.1: '153' 1.2.0: v154 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.2 1.1.0: 1.0.2 1.1.1: 1.0.2 1.2.0: 1.2.0 datasource: v154 description: Input converter for dbSNP rsid input developer: citation: 'Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine. (dbSNP Build ID: 151).' email: support@cravat.us name: Kyle Moad organization: In Silico Solutions website: https://www.ncbi.nlm.nih.gov/snp groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2021-06-28T20:16:57.214182+0000 requires: null size: 30397848104 tags: - input/output title: dbSNP Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 - 1.2.0 dbsnp_common: code_size: 167396 commercial_warning: null data_size: 1396537348 data_sources: 1.0.1: v154 data_versions: 1.0.1: 1.0.1 datasource: v154 description: Selection of SNPs with a minor allele frequency of 1% or greater is an attempt to identify variants that appear to be reasonably common in the general population. developer: citation: 'Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 2001 Jan 1;29(1):308-11. PMID: 11125122; PMC: PMC29783' email: supprt@cravat.us name: NCBI organization: NCBI website: https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=784649537_AtjYqLFz0CTNkRh8qWf8vOHQpNXp&c=chr1&g=snp151Common groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-01-19T16:38:47.553189+0000 requires: null size: 1396704744 tags: - variants title: dbSNP Common type: annotator versions: - 1.0.1 default_package: code_size: 332456 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: A starter set of annotators developer: citation: '' email: support@opencravat.org name: OpenCRAVAT Team organization: KarchinLab website: https://opencravat.org groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-03-31T18:34:34.574935+0000 requires: - clinvar - cosmic - gnomad3 - go - polyphen2 - sift - vest - chasmplus - revel - cadd_exome - dann_coding size: 332456 tags: null title: Default Package type: package versions: - 1.0.0 denovo: code_size: 192641 commercial_warning: null data_size: 38727680 data_sources: 1.6.1: null 1.6.10: v161 1.6.11: v161 1.6.2: null 1.6.3: v161 1.6.4: v161 1.6.5: v161 1.6.7: v161 1.6.8: v161 1.6.9: v161 data_versions: 1.6.1: 1.6.1 1.6.10: 1.6.1 1.6.11: 1.6.1 1.6.2: 1.6.1 1.6.3: 1.6.1 1.6.4: 1.6.1 1.6.5: 1.6.1 1.6.7: 1.6.1 1.6.8: 1.6.1 1.6.9: 1.6.1 datasource: v161 description: Denovo annotation. Denovo is a collection of germline variants in the human genome which are present in children but not their parents. developer: citation: 'Turner, T.N., Yi, Q., Krumm, N., Huddleston, J., Hoekzema, K., Stessman, H.A., Doebley, A., Bernier, R.A., Nickerson, D.A., & Eichler, E.E. (2017). denovo-db: a compendium of human de novo variants. Nucleic Acids Research, 45(D1):D804-D811.' email: support@cravat.us name: Tychele Turner organization: University of Washington website: http://denovo-db.gs.washington.edu/ groups: [] has_logo: true hidden: false latest_version: 1.6.11 publish_time: 2019-01-30T18:37:48.877593+0000 requires: null size: 38920321 tags: - variants - clinical relevance title: Denovo-DB type: annotator versions: - 1.6.1 - 1.6.2 - 1.6.3 - 1.6.4 - 1.6.5 - 1.6.7 - 1.6.8 - 1.6.9 - 1.6.10 - 1.6.11 encode_tfbs: code_size: 458489 commercial_warning: null data_size: 577908736 data_sources: 1.0.0: 2012-03 data_versions: 1.0.0: 1.0.0 datasource: 2012-03 description: Human transcription factor binding sites based on ChIP-seq experiments generated by production groups in the ENCODE Consortium. developer: citation: "ENCODE Project Consortium. An integrated encyclopedia of DNA elements\ \ in the human genome. Nature 489, 57\u201374 (2012)." email: '' name: ENCODE Project Consortium organization: ENCODE Project Consortium website: http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeAwgTfbsUniform#TRACK_HTML groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T18:44:35.954192+0000 requires: - hg19 size: 578367225 tags: - non coding title: ENCODE TFBS type: annotator versions: - 1.0.0 ensembl_regulatory_build: code_size: 97964 commercial_warning: null data_size: 49477636 data_sources: 1.0.0: 2020.06.09 1.0.1: 2020.06.09 1.0.2: 2020.06.09 1.0.3: 2020.06.09 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 datasource: 2020.06.09 description: An up-to-date and comprehensive summary of regulatory features across the genome, as well as popular curated external resources. developer: citation: 'Zerbino DR, Wilder SP, Johnson N, Juettemann T, Flicek PR. The ensembl regulatory build. Genome Biology. 2015 Mar;16:56. DOI: 10.1186/s13059-015-0621-5.' email: support@cravat.us name: Ensembl organization: Ensembl website: https://uswest.ensembl.org/info/genome/funcgen/regulatory_build.html groups: [] has_logo: true hidden: false latest_version: 1.0.3 publish_time: 2020-09-29T15:47:28.142064+0000 requires: - wgensembl_regulatory_build size: 49575600 tags: - non coding title: Ensembl Regulatory Build type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 esp6500: code_size: 1454140 commercial_warning: null data_size: 114604032 data_sources: 1.0.0: null 6500.2.0: null 6500.2.1: v.0.0.30 6500.2.2: v.0.0.30 6500.2.3: v0.0.30 6500.2.4: v0.0.30 6500.2.5: v0.0.30 6500.2.6: v0.0.30 data_versions: 1.0.0: 1.0.0 6500.2.0: 1.0.0 6500.2.1: 1.0.0 6500.2.2: 1.0.0 6500.2.3: 1.0.0 6500.2.4: 1.0.0 6500.2.5: 1.0.0 6500.2.6: 1.0.0 datasource: v0.0.30 description: Exome Sequencing Project 6500 developer: citation: Exome Variant Server, NHLBI GO Exome Sequencing Project (ESP), Seattle, WA email: evsserver@uw.edu name: University of Washington organization: University of Washington website: http://evs.gs.washington.edu/EVS/ groups: [] has_logo: true hidden: false latest_version: 6500.2.6 publish_time: 2019-01-30T01:56:13.545867+0000 requires: - wgesp6500 size: 116058172 tags: - allele frequency title: ESP6500 type: annotator versions: - 1.0.0 - 6500.2.0 - 6500.2.1 - 6500.2.2 - 6500.2.3 - 6500.2.4 - 6500.2.5 - 6500.2.6 ess_gene: code_size: 25861 commercial_warning: null data_size: 321540 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.04: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.04 3.5.5: 3.5.04 3.5.6: 3.5.04 3.5.7: 3.5.04 3.5.8: 3.5.04 datasource: dbNSFP v4.0b1 description: Essential Genes provides a database of genetic variation & mutational burden in 2472 human orthologs developer: citation: 'Georgi, B., Voight, B.F., & Bucan, M. (2013). From Mouse to Human: Evolutionary Genomics Analysis of Human Orthologs of Essential Genes. PLoS genetics 9(5): e1003484.' email: support@cravat.us name: "Benjamin Georgi, Benjamin F. Voight, Maja Bu\u0107an" organization: Department of Genetics, University of Pennsylvania website: https://doi.org/10.1371/journal.pgen.1003484 groups: [] has_logo: true hidden: false latest_version: 3.5.8 publish_time: 2019-01-30T18:39:07.249427+0000 requires: null size: 347401 tags: - genes title: Essential Genes type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.5 - 3.5.6 - 3.5.7 - 3.5.8 exac_gene: code_size: 29836 commercial_warning: null data_size: 2516996 data_sources: 0.3.1: null 0.3.11: null 0.3.12: null 0.3.13: v0.3.1 0.3.14: v0.3.1 0.3.15: v0.3.1 0.3.16: v0.3.1 0.3.17: v0.3.1 0.3.18: v0.3.1 0.3.19: v0.3.1 0.3.20: v0.3.1 0.3.21: v0.3.1 0.4.0: v0.3.1 data_versions: 0.3.1: 0.3.1 0.3.11: 0.3.1 0.3.12: 0.3.1 0.3.13: 0.3.1 0.3.14: 0.3.1 0.3.15: 0.3.1 0.3.16: 0.3.1 0.3.17: 0.3.1 0.3.18: 0.3.1 0.3.19: 0.3.1 0.3.20: 0.3.1 0.3.21: 0.3.1 0.4.0: 0.4.0 datasource: v0.3.1 description: ExAC Functional Gene Constraint & CNV Scores provides probability of LoF tolerance/intolerance developer: citation: Lek, M., Karczewski, K. J., Minikel, E. V., et al. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285. email: support@cravat.us name: ExAC organization: Exome Aggregation Consortium website: http://exac.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 0.4.0 publish_time: 2019-01-30T18:39:16.427766+0000 requires: null size: 2546832 tags: - genes title: ExAC Gene and CNV type: annotator versions: - 0.3.1 - 0.3.11 - 0.3.12 - 0.3.13 - 0.3.14 - 0.3.15 - 0.3.16 - 0.3.17 - 0.3.18 - 0.3.19 - 0.3.20 - 0.3.21 - 0.4.0 excelreporter: code_size: 1479603 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null datasource: null description: Microsoft Excel reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.7 publish_time: '2018-08-14T15:05:24.000000' requires: null size: 1479603 tags: - reporters title: Excel Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 fathmm: code_size: 19497 commercial_warning: null data_size: 10401128448 data_sources: 2.3.0: null 2.3.01: null 2.3.02: v2.3 2.3.03: v2.3 2.3.4: v2.3 2.3.5: v2.3 2.3.6: v2.3 2.3.7: v2.3 data_versions: 2.3.0: 2.3.0 2.3.01: 2.3.0 2.3.02: 2.3.0 2.3.03: 2.3.0 2.3.4: 2.3.0 2.3.5: 2.3.0 2.3.6: 2.3.0 2.3.7: 2.3.0 datasource: v2.3 description: Functional analysis through hidden markov models. developer: citation: Shihab, H. A., Gough, J., Mort, M., Cooper, D. N., Day, I. N., & Gaunt, T. R. (2014). Ranking non-synonymous single nucleotide polymorphisms based on disease concepts. Human genomics, 8(1), 11. email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/index.html groups: [] has_logo: true hidden: false latest_version: 2.3.7 publish_time: 2019-01-30T18:39:44.613445+0000 requires: - wgfathmm size: 10401147945 tags: - variant effect prediction title: FATHMM type: annotator versions: - 2.3.0 - 2.3.01 - 2.3.02 - 2.3.03 - 2.3.4 - 2.3.5 - 2.3.6 - 2.3.7 fathmm_mkl: code_size: 135890 commercial_warning: null data_size: 5069600772 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: A database capable of predicting the effects of coding variants using nucleotide-based HMMs. developer: citation: 'Shihab, Hashem A., et al. "An integrative approach to predicting the functional effects of non-coding and coding sequence variation." Bioinformatics 31.10 (2015): 1536-1543.' email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/fathmmMKL.htm groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-10-13T17:12:25.605441+0000 requires: null size: 5069736662 tags: - variant effect prediction - non coding title: FATHMM MKL type: annotator versions: - 1.0.0 fathmm_xf: code_size: 112331 commercial_warning: null data_size: 38602925793 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Enhanced Accuracy in Predicting the Functional Consequences of Coding Single Nucleotide Variants (SNVs). developer: citation: 'Rogers, Mark F., et al. "Supplementary information for FATHMM-XF: accurate prediction of pathogenic point mutations via extended features." (2015).' email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/fathmm-xf/index.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-14T18:10:52.201216+0000 requires: - pytabix size: 38603038124 tags: - variant effect prediction - non coding title: FATHMM type: annotator versions: - 1.0.0 fathmm_xf_coding: code_size: 106390 commercial_warning: null data_size: 4061906948 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: Enhanced Accuracy in Predicting the Functional Consequences of Coding Single Nucleotide Variants (SNVs). developer: citation: 'Rogers, Mark F., et al. "Supplementary information for FATHMM-XF: accurate prediction of pathogenic point mutations via extended features." (2015).' email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/fathmm-xf/index.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-11T05:34:20.017793+0000 requires: null size: 4062013338 tags: - variant effect prediction - non coding title: FATHMM XF Coding type: annotator versions: - 1.0.0 fitcons: code_size: 557663 commercial_warning: null data_size: 4229273604 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: fitCons predicts the fraction of genomic positions belonging to a specific function class that are under selective pressure. developer: citation: 'Gulko, Brad, et al. "A method for calculating probabilities of fitness consequences for point mutations across the human genome." Nature genetics 47.3 (2015): 276-283.' email: support@cravat.us name: Department of Biological Statistics & Computational Biology, Cornell University organization: Department of Biological Statistics & Computational Biology, Cornell University website: http://compgen.cshl.edu/fitCons/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-02-17T18:12:06.697575+0000 requires: null size: 4229831267 tags: - variant effect prediction title: fitCons type: annotator versions: - 1.0.0 flank_seq: code_size: 25691 commercial_warning: null data_size: 6014561977 data_sources: 0.0.1: null 0.0.2: null 0.0.3: null data_versions: 0.0.1: 0.0.1 0.0.2: 0.0.1 0.0.3: 0.0.1 datasource: null description: Reference and alternate bases with flanking sequence developer: citation: Wood, M. A., et al. (2018). neoepiscope Improves Neoepitope Prediction with Multi-variant Phasing. BioRxiv, 418129. email: support@cravat.us name: Mary Wood organization: Oregon Health and Science University website: https://github.com/pdxgx/neoepiscope groups: [] has_logo: true hidden: false latest_version: 0.0.3 publish_time: 2019-03-07T18:46:08.026166+0000 requires: null size: 6014587668 tags: - variants title: Flanking Sequence type: annotator versions: - 0.0.1 - 0.0.2 - 0.0.3 ftdna-converter: code_size: 30546 commercial_warning: null data_size: 60 data_sources: 1.2.2: null 1.3.0: null 1.3.1: null 1.4.0: null data_versions: 1.2.2: 1.2.2 1.3.0: 1.3.0 1.3.1: 1.3.0 1.4.0: 1.3.0 datasource: null description: Allows user to input files in FamilyTreeDNA format. In both the graphical interface and command line usage, file format will be automatically detected after this converter is installed. developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.4.0 publish_time: 2020-04-01T10:30:57.549546+0000 requires: - varmeta - vcfinfo>=1.1.5 - hg19wgs size: 30606 tags: - input/output title: FamilyTreeDNA Converter type: converter versions: - 1.2.2 - 1.3.0 - 1.3.1 - 1.4.0 gencode: code_size: 3219765 commercial_warning: null data_size: 349957323 data_sources: 33.0.0: null data_versions: 33.0.0: 33.0.0 datasource: null description: Gene mapper using UCSC Gencode developer: citation: '' email: rkim@oakbioinformatics.com name: Rick Kim organization: Oak Bioinformatics LLC website: http://www.oakbioinformatics.com groups: [] has_logo: false hidden: false latest_version: 33.0.0 publish_time: 2022-01-17T22:42:32.988292+0000 requires: - hg38wgs size: 353177088 tags: null title: Gencode Gene Mapper type: mapper versions: - 33.0.0 genehancer: code_size: 64387 commercial_warning: Freely available for non-commercial use. data_size: 42317828 data_sources: 1.0.0: v4.7 1.1.0: v4.7 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.7 description: GeneHancer is a database of genome-wide enhancer-to-gene and promoter-to-gene associations. developer: citation: 'Rosen, N., V. Chalifa-Caspi, O. Shmueli, A. Adato, M. Lapidot, J. Stampnitzky, M. Safran, and D. Lancet (2003). GeneLoc: Exon-based integration of human genome maps. Bioinformatics 19(S1). URL: http://genecards.weizmann.ac.il/geneloc' email: support@cravat.us name: Weizmann Institute of Science organization: Weizmann Institute of Science website: https://genecards.weizmann.ac.il/geneloc_prev/index.shtml groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-11-10T20:40:26.352043+0000 requires: - wggenehancer - wgenhancer size: 42382215 tags: - non coding title: GeneHancer type: annotator versions: - 1.0.0 - 1.1.0 genocanyon: code_size: 86902 commercial_warning: null data_size: 4294141956 data_sources: 1.0.0: v4.2 data_versions: 1.0.0: 1.0.0 datasource: v4.2 description: GenoCanyon is a whole-genome functional annotation approach based on unsupervised statistical learning. It integrates genomic conservation measures and biochemical annotation data to predict the functional potential at each nucleotid. developer: citation: Lu, Q., Hu, Y., Sun, J. et al. A Statistical Framework to Predict Functional Non-Coding Regions in the Human Genome Through Integrated Analysis of Annotation Data. Sci Rep 5, 10576 (2015). https://doi.org/10.1038/srep10576 email: support@cravat.us name: '' organization: Yale University website: http://zhaocenter.org/GenoCanyon_Index.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-05-26T14:37:46.681909+0000 requires: null size: 4294228858 tags: - non coding title: GenoCanyon type: annotator versions: - 1.0.0 gerp: code_size: 19670 commercial_warning: null data_size: 4685320192 data_sources: 3.5.0: null 3.5.01: null 3.5.02: null 3.5.03: dbNSFP v4.0b1 3.5.04: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.6.1: dbNSFP v4.0b1 3.6.2: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.0 3.5.5: 3.5.0 3.5.6: 3.5.0 3.6.1: 3.5.0 3.6.2: 3.5.0 datasource: dbNSFP v4.0b1 description: Genomic Evolutionary Rate Profiling developer: citation: Davydov, E. V., Goode, D. L., Sirota, M., Cooper, G. M., Sidow, A., & Batzoglou, S. (2010). Identifying a high fraction of the human genome to be under selective constraint using GERP++. PLoS computational biology, 6(12), e1001025. email: support@cravat.us name: Stanford University Sidow Lab organization: Stanford University Sidow Lab website: http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html groups: [] has_logo: true hidden: false latest_version: 3.6.2 publish_time: 2019-01-30T18:39:54.218255+0000 requires: - wggerp size: 4685339862 tags: - variants - evolution title: GERP++ type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.5 - 3.5.6 - 3.6.1 - 3.6.2 geuvadis: code_size: 32616 commercial_warning: null data_size: 262144 data_sources: 0.0.1: null data_versions: 0.0.1: 0.0.1 datasource: null description: Significant snp-gene associations reported by the Geuvadis project developer: citation: 'Lappalainen, Tuuli, et al. "Transcriptome and genome sequencing uncovers functional variation in humans." Nature 501.7468 (2013): 506-511.' email: support@cravat.us name: In Silico Solutions organization: dbNSFP website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 0.0.1 publish_time: 2020-08-21T18:51:24.668465+0000 requires: null size: 294760 tags: - variants title: Geuvadis eQTLs type: annotator versions: - 0.0.1 ghis: code_size: 36789 commercial_warning: null data_size: 681988 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.6.0: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 3.6.0: 3.6.0 datasource: dbNSFP v4.0b1 description: Gene haploinsufficiency scoring developer: citation: Steinberg, J., Honti, F., Meader, S., & Webber, C. (2015). Haploinsufficiency predictions without study bias. Nucleic acids research, 43(15), e101-e101. email: support@cravat.us name: Julia Steinberg, Frantisek Honti, Stephen Meader, Caleb Webber organization: 1MRC Functional Genomics Unit, University of Oxford website: https://doi.org/10.1093/nar/gkv474 groups: [] has_logo: true hidden: false latest_version: 3.6.0 publish_time: 2019-01-30T18:40:02.446704+0000 requires: - wgghis size: 718777 tags: - genes title: GHIS type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.4 - 3.5.5 - 3.6.0 gnomad: code_size: 169521 commercial_warning: null data_size: 17426890752 data_sources: 2.0.2: null '2.1': null 2.1.0: null 2.1.01: null 2.1.02: null 2.1.03: v2.1 2.1.04: v2.1 2.1.5: v2.1 2.1.6: v2.1 2.1.7: v2.1 2.1.8: v2.1 2.2.0: v2.1 data_versions: 2.0.2: 2.0.2 '2.1': '2.1' 2.1.0: '2.1' 2.1.01: '2.1' 2.1.02: '2.1' 2.1.03: '2.1' 2.1.04: '2.1' 2.1.5: '2.1' 2.1.6: '2.1' 2.1.7: '2.1' 2.1.8: '2.1' 2.2.0: '2.1' datasource: v2.1 description: Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects developer: citation: Lek, M., Karczewski, K. J., Minikel, E. V., et al. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285. email: '' name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 2.2.0 publish_time: 2019-01-30T18:40:12.357216+0000 requires: - wggnomad - wgallelefrequency size: 17427060273 tags: - allele frequency title: gnomAD type: annotator versions: - 2.0.2 - '2.1' - 2.1.0 - 2.1.01 - 2.1.02 - 2.1.03 - 2.1.04 - 2.1.5 - 2.1.6 - 2.1.7 - 2.1.8 - 2.2.0 gnomad3: code_size: 166721 commercial_warning: null data_size: 44017865728 data_sources: 1.0.0: v3 1.1.0: v3 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v3 description: Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects developer: citation: Karczewski, Konrad J., et al. "The Mutational Constraint Spectrum Quantified from Variation in 141,456 Humans." BioRxiv, Apr. 2020, p. 531210. www.biorxiv.org, doi:10.1101/531210. email: '' name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-08-21T18:53:57.553853+0000 requires: - wggnomad3 size: 44018032449 tags: - allele frequency title: gnomAD3 type: annotator versions: - 1.0.0 - 1.1.0 gnomad3_counts: code_size: 98986 commercial_warning: null data_size: 3635828740 data_sources: 1.0.0: v3.1 1.1.0: v3.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: v3.1 description: Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects developer: citation: Karczewski, Konrad J., et al. "The Mutational Constraint Spectrum Quantified from Variation in 141,456 Humans." BioRxiv, Apr. 2020, p. 531210. www.biorxiv.org, doi:10.1101/531210. email: '' name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-06-28T13:22:16.519131+0000 requires: null size: 3635927726 tags: - allele frequency title: gnomAD3 Counts type: annotator versions: - 1.0.0 - 1.1.0 gnomad_gene: code_size: 178804 commercial_warning: null data_size: 10373124 data_sources: 2.1.03: null 2.1.04: v2.1 2.1.5: v2.1 2.1.6: v2.1 2.1.7: v2.1 2.1.8: v2.1 2.2.0: v2.1 data_versions: 2.1.03: 2.1.03 2.1.04: 2.1.03 2.1.5: 2.1.03 2.1.6: 2.1.03 2.1.7: 2.1.03 2.1.8: 2.1.03 2.2.0: 2.2.0 datasource: v2.1 description: Gene level population statistics from gnomAD developer: citation: https://www.nature.com/articles/nature19057 email: support@cravat.us name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 2.2.0 publish_time: 2019-01-30T18:40:20.370464+0000 requires: - wggnomad_gene size: 10551928 tags: - genes title: gnomAD Gene type: annotator versions: - 2.1.03 - 2.1.04 - 2.1.5 - 2.1.6 - 2.1.7 - 2.1.8 - 2.2.0 go: code_size: 2330045 commercial_warning: null data_size: 30945280 data_sources: 2018.03.08: null 2018.12.02: null 2018.12.021: null 2018.12.022: 2018.12.06 2018.12.023: 2018.12.06 2019.03.20: 2018.12.06 2019.05.13: 2018.12.06 2019.08.02: 2018.12.06 2019.08.16: 2018.12.06 2019.2.006: 2018.12.06 2020.12.03: 2020.12.03 2021.02.04: 2020.12.03 2022.02.01: 2023.02.01 2022.10.05: 2022.10.05 2022.11.01: 2023.01.01 data_versions: 2018.03.08: 2018.03.08 2018.12.02: 2018.03.08 2018.12.021: 2018.12.021 2018.12.022: 2018.12.021 2018.12.023: 2018.12.021 2019.03.20: 2018.12.021 2019.05.13: 2018.12.021 2019.08.02: 2018.12.021 2019.08.16: 2018.12.021 2019.2.006: 2018.12.021 2020.12.03: 2020.12.03 2021.02.04: 2021.02.04 2022.02.01: 2022.02.01 2022.10.05: 2022.10.05 2022.11.01: 2022.11.01 datasource: 2023.01.01 description: Gene Ontology (GO) project provides a comprehensive computable knowledge regarding the functions of genes and gene products. developer: citation: 'Ashburner, M., Ball, C. A., Blake, J. A., et al. (2000). Gene Ontology: tool for the unification of biology. Nature genetics, 25(1), 25.' email: support@cravat.us name: Gene Ontology Consortium organization: Gene Ontology Consortium website: http://geneontology.org/ groups: [] has_logo: true hidden: false latest_version: 2022.11.01 publish_time: 2023-01-03T22:41:13.372375+0000 requires: - wggo size: 33275325 tags: - genes title: Gene Ontology type: annotator versions: - 2018.03.08 - 2018.12.02 - 2018.12.021 - 2018.12.022 - 2018.12.023 - 2019.2.006 - 2019.03.20 - 2019.05.13 - 2019.08.02 - 2019.08.16 - 2020.12.03 - 2021.02.04 - 2022.02.01 - 2022.10.05 - 2022.11.01 grasp: code_size: 62565 commercial_warning: 'For commercial use, contact johnsonad2@nhlbi.nih.gov. ' data_size: 714883072 data_sources: 2.0.0: null 2.0.1: null 2.0.2: null 2.0.3: null 2.0.4: v2.0.0.0 2.0.5: v2.0.0.0 2.0.6: v2.0.0.0 2.0.7: v2.0.0.0 data_versions: 2.0.0: 2.0.0 2.0.1: 2.0.1 2.0.2: 2.0.2 2.0.3: 2.0.2 2.0.4: 2.0.2 2.0.5: 2.0.2 2.0.6: 2.0.2 2.0.7: 2.0.2 datasource: v2.0.0.0 description: Genome-Wide Repository of Associations Between SNPs and Phenotypes developer: citation: "Leslie R, O\u2019Donnell CJ, Johnson AD (2014) GRASP: analysis of genotype-phenotype\ \ results from 1,390 genome-wide association studies and corresponding open\ \ access database. Bioinformatics 30(12), i185-94" email: support@cravat.us name: NIH organization: NIH website: https://grasp.nhlbi.nih.gov/Overview.aspx groups: [] has_logo: true hidden: false latest_version: 2.0.7 publish_time: 2019-01-30T18:41:07.241162+0000 requires: - wggrasp size: 714945637 tags: - variants - non coding - clinical relevance - literature title: GRASP type: annotator versions: - 2.0.0 - 2.0.1 - 2.0.2 - 2.0.3 - 2.0.4 - 2.0.5 - 2.0.6 - 2.0.7 gtex: code_size: 17026 commercial_warning: null data_size: 14680064 data_sources: 6.0.0: null 6.0.01: null 7.0.0: null 7.0.1: v7 7.0.2: v7 7.0.3: v7 7.0.4: v7 data_versions: 6.0.0: 6.0.0 6.0.01: 6.0.0 7.0.0: 6.0.0 7.0.1: 7.0.1 7.0.2: 7.0.1 7.0.3: 7.0.1 7.0.4: 7.0.1 datasource: v7 description: Genotype-tissue expression developer: citation: https://gtexportal.org/home/faq#citePortal email: support@cravat.us name: GTEx Consortium organization: The Broad Institute of MIT and Harvard website: https://gtexportal.org/home/ groups: [] has_logo: true hidden: false latest_version: 7.0.4 publish_time: 2019-01-30T19:10:29.903408+0000 requires: - wggtex size: 14697090 tags: - variants title: GTEx eQTLs type: annotator versions: - 6.0.0 - 6.0.01 - 7.0.0 - 7.0.1 - 7.0.2 - 7.0.3 - 7.0.4 gwas_catalog: code_size: 120874 commercial_warning: null data_size: 38876160 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: GWAS Catalog Annotator developer: citation: 'Buniello A, MacArthur JAL, Cerezo M, Harris LW, Hayhurst J, Malangone C, McMahon A, Morales J, Mountjoy E, Sollis E, Suveges D, Vrousgou O, Whetzel PL, Amode R, Guillen JA, Riat HS, Trevanion SJ, Hall P, Junkins H, Flicek P, Burdett T, Hindorff LA, Cunningham F and Parkinson H. The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019. Nucleic Acids Research, 2019, Vol. 47 (Database issue): D1005-D1012.' email: gwas-info@ebi.ac.uk. name: NHGRI-EBI organization: NHGRI-EBI website: https://www.ebi.ac.uk/gwas/home groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-28T21:36:06.501319+0000 requires: - wggwas_catalog size: 38997034 tags: - variants - non coding - clinical relevance - literature title: GWAS Catalog type: annotator versions: - 1.0.0 haploreg_afr: code_size: 10066 commercial_warning: null data_size: 10396768256 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in African populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T16:58:47.649809+0000 requires: - dbsnp - wghaploreg_afr size: 10396778322 tags: - non coding title: HaploReg African type: annotator versions: - 1.0.0 - 1.1.0 haploreg_amr: code_size: 10041 commercial_warning: null data_size: 15905863680 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in American populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T17:26:28.706126+0000 requires: - dbsnp - wghaploreg_amr size: 15905873721 tags: - non coding title: HaploReg American type: annotator versions: - 1.0.0 - 1.1.0 haploreg_asn: code_size: 10141 commercial_warning: null data_size: 12917386240 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in Asian populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-31T14:47:03.039024+0000 requires: - dbsnp - wghaploreg_asn size: 12917396381 tags: - non coding title: HaploReg Asian type: annotator versions: - 1.0.0 - 1.1.0 haploreg_eur: code_size: 10100 commercial_warning: null data_size: 15219340288 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in European populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T17:43:34.345345+0000 requires: - dbsnp - wghaploreg_eur size: 15219350388 tags: - non coding title: HaploReg European type: annotator versions: - 1.0.0 - 1.1.0 haploreg_group: code_size: 4329 commercial_warning: null data_size: 0 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: null datasource: v4.1 description: SNPs in LD with the variant developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T18:59:04.386705+0000 requires: null size: 4329 tags: - non coding title: HaploReg type: group versions: - 1.0.0 hereditary_cancer: code_size: 343573 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Reports on variants in a gene list implicated in nine hereditary cancer types by the Cancer Gene Census developer: citation: '' email: support@opencravat.org name: OpenCRAVAT Team organization: KarchinLab website: https://opencravat.org groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-03-31T18:11:03.997770+0000 requires: - clinvar - cosmic - dbsnp - gnomad3 - oncokb - cgc size: 343573 tags: null title: Heriditary Cancer type: package versions: - 1.0.0 hg19: code_size: 25574 commercial_warning: null data_size: 3915120 data_sources: 1.0.4: null 1.0.5: null 1.0.6: null data_versions: 1.0.4: 1.0.4 1.0.5: 1.0.4 1.0.6: 1.0.4 datasource: null description: Input coordinates are mapped to hg19 through liftOver. developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: https://github.com/KarchinLab/open-cravat-modules-karchinlab groups: [] has_logo: true hidden: false latest_version: 1.0.6 publish_time: 2019-11-26T19:57:36.190745+0000 requires: null size: 3940694 tags: - variants title: hg19 coordinates type: annotator versions: - 1.0.4 - 1.0.5 - 1.0.6 hg19wgs: code_size: 2209 commercial_warning: null data_size: 816241703 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: UCSC hg19 whole genome sequence module developer: citation: '' email: support@cravat.su name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2020-05-18T19:08:14.663706+0000 requires: null size: 816243912 tags: null title: UCSC hg19 Whole Genome Sequence type: common versions: - 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hg38wgs size: 353175458 tags: null title: UCSC hg38 Gene Mapper type: mapper versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 - 1.1.6 - 1.1.7 - 1.1.8 - 1.1.9 - 1.2.0 - 1.2.5 - 1.2.7 - 1.5.0 - 1.5.1 - 1.5.2 - 1.5.3 - 1.5.4 - 1.5.5 - 1.5.6 - 1.5.7 - 1.5.8 - 1.7.3 - 1.7.4 - 1.7.5 - 1.7.6 - 1.7.7 - 1.7.8 - 1.7.9 - 1.9.0 - 1.9.1 - 1.9.2 - 1.9.3 - 1.9.4 - 1.9.5 - 1.9.6 - 1.9.7 - 1.9.8 - 1.9.9 - 1.9.10 - 1.10.0 - 1.10.1 - 1.10.2 - 1.10.3 - 1.10.4 hg38wgs: code_size: 2240 commercial_warning: null data_size: 835393456 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: UCSC hg38 whole genome sequence module developer: citation: '' email: support@cravat.su name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2020-05-18T19:08:58.046364+0000 requires: null size: 835395696 tags: null title: UCSC hg38 Whole Genome Sequence type: common versions: - 1.0.0 hgdp: code_size: 1998931 commercial_warning: 'For academic use only. ' data_size: 61444096 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Human Genome Diversity Panel (HGDP) DNA from individuals among 51 different populations. developer: citation: '' email: '' name: Jun Z. Li et al. organization: Stanford University School of Medicine website: https://www.hagsc.org/hgdp/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-28T21:36:06.657764+0000 requires: null size: 63443027 tags: - allele frequency title: HGDP type: annotator versions: - 1.0.0 hgvs: code_size: 118430 commercial_warning: null data_size: 205697024 data_sources: 1.0.0: null 1.0.1: null 1.0.2: v15.11 1.0.3: v15.11 1.0.4: v15.11 1.0.5: v15.11 1.0.6: v15.11 1.0.7: v15.11 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.7: 1.0.0 datasource: v15.11 description: Variants described in HGVS format developer: citation: 'den Dunnen, J. T., Dalgleish, R., Maglott, D. R., et al. (2016). HGVS recommendations for the description of sequence variants: 2016 update. Human mutation, 37(6), 564-569.' email: support@cravat.us name: Human Genome Variation Society organization: Human Genome Variation Society website: http://www.hgvs.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.7 publish_time: 2019-01-30T18:41:41.109583+0000 requires: - wghgvs size: 205815454 tags: - variants title: HGVS Format type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 intact: code_size: 52656 commercial_warning: null data_size: 8708096 data_sources: 2018.11.30: 4.0.0 2019.03.20: 2018.11.30 2019.05.13: 2018.11.30 2019.08.23: 2018.11.30 2019.1.24: 4.0.0 2019.1.25: 2018.11.30 2019.2.06: 2018.11.30 data_versions: 2018.11.30: 2018.11.30 2019.03.20: 2018.11.30 2019.05.13: 2018.11.30 2019.08.23: 2018.11.30 2019.1.24: 2018.11.30 2019.1.25: 2018.11.30 2019.2.06: 2018.11.30 datasource: 2018.11.30 description: Molecular interaction data developer: citation: "Orchard, S., Ammari, M., Aranda, B., et al. (2013). The MIntAct project\xE2\ \u20AC\u201DIntAct as a common curation platform for 11 molecular interaction\ \ databases. Nucleic acids research, 42(D1), D358-D363." email: support@cravat.us name: Orchard S et al. organization: European Bioinformatics Institute (EMBL-EBI) website: https://www.ebi.ac.uk/intact/ groups: [] has_logo: true hidden: false latest_version: 2019.08.23 publish_time: 2019-01-30T18:41:50.829659+0000 requires: - wgintact size: 8760752 tags: - genes title: IntAct type: annotator versions: - 2018.11.30 - 2019.1.24 - 2019.1.25 - 2019.2.06 - 2019.03.20 - 2019.05.13 - 2019.08.23 interpro: code_size: 147116 commercial_warning: null data_size: 5845157892 data_sources: 71.0.0: 4.0.0 71.0.1: v71 71.0.2: v71 71.0.3: v71 71.0.4: v71 71.0.5: v71 71.0.6: v71 71.1.0: v71 71.2.0: v71 data_versions: 71.0.0: 71.0.0 71.0.1: 71.0.0 71.0.2: 71.0.0 71.0.3: 71.0.0 71.0.4: 71.0.0 71.0.5: 71.0.0 71.0.6: 71.0.0 71.1.0: 71.1.0 71.2.0: 71.1.0 datasource: v71 description: Protein sequence analysis & classification developer: citation: 'Mitchell, A. L., Attwood, T. K., Babbitt, P. C., et al. (2018). InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic acids research, 47(D1), D351-D360.' email: support@cravat.us name: Alex L. Mitchell et al. organization: European Bioinformatics Institute (EMBL-EBI) website: https://www.ebi.ac.uk/interpro/ groups: [] has_logo: true hidden: false latest_version: 71.2.0 publish_time: 2019-01-30T18:41:58.811979+0000 requires: - wginterpro size: 5845305008 tags: - genes title: InterPro type: annotator versions: - 71.0.0 - 71.0.1 - 71.0.2 - 71.0.3 - 71.0.4 - 71.0.5 - 71.0.6 - 71.1.0 - 71.2.0 javierre_promoters: code_size: 32060 commercial_warning: null data_size: 522331 data_sources: 2019.03.20: November 17, 2016 2019.05.20: November 17, 2016 2019.2.13: November 17, 2016 2019.2.22: November 17, 2016 2019.2.5: November 17, 2016 2019.3.12: November 17, 2016 2022.12.12: November 17, 2016 data_versions: 2019.03.20: 2019.2.5 2019.05.20: 2019.05.20 2019.2.13: 2019.2.5 2019.2.22: 2019.2.5 2019.2.5: 2019.2.5 2019.3.12: 2019.2.5 2022.12.12: 2019.05.20 datasource: November 17, 2016 description: Javierre et al promoter-interacting regions | Promoter capture Hi-C was used to identify interacting regions of 31,253 promoters that are significantly associated across 17 human primary hematopoietic cell types. developer: citation: Javierre, B. M., Burren S.E. et al. (2016). Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters. Cell, 167(5), 1369-1384. email: null name: null organization: The Babraham Institute, Babraham Research Campus, Cambridge website: https://doi.org/10.1016/j.cell.2016.09.037 groups: [] has_logo: true hidden: false latest_version: 2022.12.12 publish_time: 2019-02-11T20:29:36.950176+0000 requires: null size: 554391 tags: - genes - non coding - functional studies title: Promoter IR type: annotator versions: - 2019.2.5 - 2019.2.13 - 2019.2.22 - 2019.3.12 - 2019.03.20 - 2019.05.20 - 2022.12.12 linsight: code_size: 150637 commercial_warning: For commercial use, contact xmliu.uth@gmail.com data_size: 9191047168 data_sources: 1.0.0: null 2018.10.19: 2018.10.19 2018.10.191: 2018.10.19 2018.10.192: 2018.10.19 2019.02.006: 2018.10.19 2019.03.20: 2018.10.19 2019.05.13: 2018.10.19 2021.01.08: 2018.10.19 data_versions: 1.0.0: 1.0.0 2018.10.19: 2018.10.19 2018.10.191: 2018.10.19 2018.10.192: 2018.10.19 2019.02.006: 2018.10.19 2019.03.20: 2018.10.19 2019.05.13: 2018.10.19 2021.01.08: 2018.10.19 datasource: 2018.10.19 description: LINSIGHT developer: citation: Huang, Y. F., Gulko, B., & Siepel, A. (2017). Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data. Nature genetics, 49(4), 618. email: asiepel@cshl.edu name: Adam Siepel organization: Cold Spring Harbor Laboratory website: http://github.com/CshlSiepelLab/LINSIGHT/blob/master/README.md groups: [] has_logo: true hidden: false latest_version: 2021.01.08 publish_time: '2018-11-01T20:59:34.000000' requires: null size: 9191197805 tags: - variants - non coding - evolution title: LINSIGHT type: annotator versions: - 1.0.0 - 2018.10.19 - 2018.10.191 - 2018.10.192 - 2019.02.006 - 2019.03.20 - 2019.05.13 - 2021.01.08 litvar: code_size: 377502 commercial_warning: null data_size: 0 data_sources: 1.0.0: Live 1.1.0: Live data_versions: 1.0.0: null 1.1.0: null datasource: Live description: LitVar allows the search and retrieval of variant relevant information from biomedical literature. developer: citation: 'Allot, Alexis, et al. "LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC." Nucleic acids research 46.W1 (2018): W530-W536.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/LitVar/#!?query= groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T16:55:04.281555+0000 requires: - dbsnp size: 377502 tags: - literature title: LitVar type: annotator versions: - 1.0.0 - 1.1.0 loftool: code_size: 27421 commercial_warning: null data_size: 559108 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.6.0: dbNSFP v4.0b1 3.6.1: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 3.6.0: 3.6.0 3.6.1: 3.6.0 datasource: dbNSFP v4.0b1 description: Gene intolerance score based on loss-of-function variants developer: citation: 'Fadista, J., Oskolkov, N., Hansson, O., & Groop, L. (2016). LoFtool: a gene intolerance score based on loss-of-function variants in 60 706 individuals. Bioinformatics, 33(4), 471-474.' email: support@cravat.us name: "Jo\xE3o Fadista, Nikolay Oskolkov, Ola Hansson, Leif Groop" organization: Lund University Diabetes Centre website: https://doi.org/10.1093/bioinformatics/btv602 groups: [] has_logo: true hidden: false latest_version: 3.6.1 publish_time: 2019-01-30T18:42:16.687716+0000 requires: null size: 586529 tags: - genes title: LoFtool type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.4 - 3.5.5 - 3.6.0 - 3.6.1 lrt: code_size: 91654 commercial_warning: null data_size: 3874093060 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: The likelihood ratio test (LRT) can accurately identify a subset of deleterious mutations that disrupt highly conserved amino acids within protein-coding sequences. developer: citation: 'Chun, Sung, and Justin C. Fay. "Identification of deleterious mutations within three human genomes." Genome research 19.9 (2009): 1553-1561.' email: support@cravat.us name: Sung Chun and Justin C. Fay organization: Computational Biology Program, University of Washington website: http://www.genetics.wustl.edu/jflab/lrt_query.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-09-29T15:58:17.873304+0000 requires: null size: 3874184714 tags: - variant effect prediction title: Likelihood Ratio Test type: annotator versions: - 1.0.0 mavedb: code_size: 64932 commercial_warning: null data_size: 2021380 data_sources: 1.0.0: v1.7.1 1.0.1: v1.7.2 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v1.7.2 description: MaveDB is a public repository for datasets from Multiplexed Assays of Variant Effect (MAVEs). developer: citation: 'Esposito, Daniel, et al. "MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect." Genome biology 20.1 (2019): 1-11.' email: support@cravat.us name: Fowler Lab organization: University of Washington, Department of Genome Sciences website: https://www.mavedb.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-05-25T03:11:40.549942+0000 requires: null size: 2086312 tags: - functional studies title: MaveDB type: annotator versions: - 1.0.0 - 1.0.1 metalr: code_size: 240688 commercial_warning: null data_size: 3968645124 data_sources: 1.0.0: v4.1 1.0.1: v4.1 1.0.2: v4.1 1.0.3: v4.1 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 datasource: v4.1 description: MetaLR creates an ensemble-based prediction score by using machine learning and logistic regression. developer: citation: Dong C, Wei P, Jian X, Gibbs R, Boerwinkle E, Wang K* and Liu X*. (2015) Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies. Human Molecular Genetics 24(8):2125-2137. email: support@cravat.us name: Chengliang Dong organization: University of Southern California, Biostatistics Department website: https://academic.oup.com/hmg/article/24/8/2125/651446 groups: [] has_logo: true hidden: false latest_version: 1.0.3 publish_time: 2020-09-14T14:59:15.764989+0000 requires: null size: 3968885812 tags: - variant effect prediction title: MetaLR type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 metasvm: code_size: 282079 commercial_warning: null data_size: 3968694276 data_sources: 1.0.0: v4.1 1.0.1: v4.1 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v4.1 description: MetaSVM creates an ensemble-based prediction score by using a support vector machine model. developer: citation: Dong C, Wei P, Jian X, Gibbs R, Boerwinkle E, Wang K* and Liu X*. (2015) Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies. Human Molecular Genetics 24(8):2125-2137. email: support@cravat.us name: Chengliang Dong organization: University of Southern California, Biostatistics Department website: https://academic.oup.com/hmg/article/24/8/2125/651446 groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-09-14T15:00:20.993477+0000 requires: null size: 3968976355 tags: - variant effect prediction title: MetaSVM type: annotator versions: - 1.0.0 - 1.0.1 mirbase: code_size: 175884 commercial_warning: null data_size: 468996 data_sources: 1.0.0: v3.0 1.0.1: v3.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v3.0 description: A microRNA database is a searchable database of published miRNA sequences and annotation. developer: citation: 'Kozomara, Ana, and Sam Griffiths-Jones. "miRBase: annotating high confidence microRNAs using deep sequencing data." Nucleic acids research 42.D1 (2014): D68-D73' email: mirbase@manchester.ac.uk name: Faculty of Biology, Medicine, and Health, Uninversity of Manchester organization: Faculty of Biology, Medicine, and Health, Uninversity of Manchester website: http://www.mirbase.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-08-31T15:01:17.047131+0000 requires: - wgmirbase size: 644880 tags: - non coding title: miRBase type: annotator versions: - 1.0.0 - 1.0.1 mitomap: code_size: 102427 commercial_warning: null data_size: 292868 data_sources: 1.0.0: 2020.04.27 1.1.0: 2020.04.27 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: 2020.04.27 description: The MITOMAP database of human mitochondrial DNA (mtDNA) information has been an important compilation of mtDNA variation for researchers, clinicians and genetic counselors. developer: citation: Lott, et al., mtDNA variation and analysis using MITOMAP and MITOMASTER, Current Protocols in Bioinformatics 44:1.23.1-1.23.26 (December 2013). email: support@cravat.us name: '' organization: FOSWIKI website: https://mitomap.org/foswiki/bin/view/MITOMAP/WebHome groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-06-10T18:40:43.275081+0000 requires: - wgmitomap size: 395295 tags: - variants title: MITOMAP type: annotator versions: - 1.0.0 - 1.1.0 mupit: code_size: 286228 commercial_warning: null data_size: 5287936 data_sources: 1.0.0: null 4.1.0: null 4.2.1: null 4.2.2: null 4.2.3: v5.2.4 4.2.4: v5.2.4 4.2.5: v5.2.4 4.2.6: v5.2.4 4.3.0: v5.2.4 4.3.1: v5.2.4 4.3.2: v5.2.4 4.3.3: v5.2.4 data_versions: 1.0.0: 1.0.0 4.1.0: 1.0.0 4.2.1: 1.0.0 4.2.2: 4.2.2 4.2.3: 4.2.2 4.2.4: 4.2.2 4.2.5: 4.2.2 4.2.6: 4.2.2 4.3.0: 4.2.2 4.3.1: 4.2.2 4.3.2: 4.2.2 4.3.3: 4.2.2 datasource: v5.2.4 description: Provides links to variant position and annotations in 3D MuPIT structure viewer. developer: citation: 'Niknafs, N., Kim, D., Kim, R., et al. (2013). MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures. Human genetics, 132(11), 1235-1243.' email: '' name: Johns Hopkins - Karchin Lab organization: Johns Hopkins - Karchin Lab website: http://mupit.icm.jhu.edu/MuPIT_Interactive/ groups: [] has_logo: true hidden: false latest_version: 4.3.3 publish_time: 2019-01-30T18:42:26.597314+0000 requires: null size: 5574164 tags: - genes - visualization title: MuPIT type: annotator versions: - 1.0.0 - 4.1.0 - 4.2.1 - 4.2.2 - 4.2.3 - 4.2.4 - 4.2.5 - 4.2.6 - 4.3.0 - 4.3.1 - 4.3.2 - 4.3.3 mutation_assessor: code_size: 31127 commercial_warning: null data_size: 4283258884 data_sources: '3.0': null 3.0.01: null 3.0.02: Release 3 3.0.03: Release 3 3.0.4: Release 3 3.0.5: Release 3 3.0.6: Release 3 3.1.0: Release 3 data_versions: '3.0': '3.0' 3.0.01: '3.0' 3.0.02: '3.0' 3.0.03: '3.0' 3.0.4: '3.0' 3.0.5: '3.0' 3.0.6: '3.0' 3.1.0: 3.1.0 datasource: Release 3 description: Mutation Assessor is a database providing prediction of the functional impact of amino-acid substitutions in proteins developer: citation: Reva, B., Antipin, Y., & Sander, C. (2007). Determinants of protein function revealed by combinatorial entropy optimization. Genome biology, 8(11), R232. email: support@cravat.us name: Chris Sander organization: Memorial Sloan-Kettering Cancer Center website: http://mutationassessor.org/r3/about.php groups: [] has_logo: true hidden: false latest_version: 3.1.0 publish_time: 2019-01-30T18:42:36.301616+0000 requires: - wgmutation_assessor size: 4283290011 tags: - variant effect prediction title: Mutation Assessor type: annotator versions: - '3.0' - 3.0.01 - 3.0.02 - 3.0.03 - 3.0.4 - 3.0.5 - 3.0.6 - 3.1.0 mutpanning: code_size: 326312 commercial_warning: null data_size: 75780 data_sources: 1.0.0: v2.0 data_versions: 1.0.0: 1.0.0 datasource: v2.0 description: Discovers new tumor genes in aggregated sequencing data. developer: citation: 'Detlein, Felix, et al. "Identification of cancer driver genes based on nucleotide context." Nature Genetics 52.2 (2020): 208-218.' email: support@cravat.us name: Broad Institute organization: Broad Institute website: http://www.cancer-genes.org groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T19:06:43.062461+0000 requires: null size: 402092 tags: - genes - cancer title: Mutpanning type: annotator versions: - 1.0.0 mutpred1: code_size: 189044 commercial_warning: null data_size: 12137957380 data_sources: 1.2.0: null 1.2.1: null 1.2.2: null 1.2.3: v1 1.2.4: v1.2 1.2.5: v1.2 1.2.6: v1.2 1.3.0: v4.1 data_versions: 1.2.0: 1.2.0 1.2.1: 1.2.0 1.2.2: 1.2.0 1.2.3: 1.2.0 1.2.4: 1.2.0 1.2.5: 1.2.0 1.2.6: 1.2.0 1.3.0: 1.3.0 datasource: v4.1 description: MutPred is a random forest model for the prediction of pathogenic missense variants and automated inference of molecular mechanisms of disease. developer: citation: 'Li B, Krishnan VG, Mort ME, Xin F, Kamati KK, Cooper DN, Mooney SD, Radivojac P. Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinformatics (2009) 25(21): 2744-2750.' email: vpejaver@uw.edu name: Vikas Pejaver organization: University of Washington website: http://mutpred1.mutdb.org/ groups: [] has_logo: true hidden: false latest_version: 1.3.0 publish_time: 2020-10-29T20:22:01.193992+0000 requires: - wgmutpred1 size: 12138146424 tags: - variant effect prediction title: MutPred type: annotator versions: - 1.2.0 - 1.2.1 - 1.2.2 - 1.2.3 - 1.2.4 - 1.2.5 - 1.2.6 - 1.3.0 mutpred_indel: code_size: 419309 commercial_warning: null data_size: 17905113092 data_sources: 1.0.0: v1.0 1.1.0: v1.0 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: v1.0 description: A web application developed to classify human non-frameshifting indels as pathogenic or benign. In addition, it predicts their impact on over 50 different protein properties and, thus, enables the inference of molecular mechanisms of pathogenicity. developer: citation: 'Pagel, Kymberleigh A., et al. "Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome." PLoS computational biology 15.6 (2019): e1007112.' email: support@cravat.us name: Kymberleigh Pagel organization: Indiana University website: http://mutpredindel.cs.indiana.edu/index.html groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-01-19T15:45:50.688799+0000 requires: null size: 17905532401 tags: - variant effect prediction title: MutPred-Indel type: annotator versions: - 1.0.0 - 1.1.0 ncbigene: code_size: 352263 commercial_warning: null data_size: 20336640 data_sources: 2018.02.21: null 2018.02.211: null 2018.02.213: null 2019.02.006: null 2019.03.23: 2019.03.23 2019.05.13: 2019.03.23 2019.08.02: 2019.03.23 2022.08.30: 2022.08.30 data_versions: 2018.02.21: 2018.02.21 2018.02.211: 2018.02.21 2018.02.213: 2018.02.21 2019.02.006: 2019.02.006 2019.03.23: 2019.03.23 2019.05.13: 2019.03.23 2019.08.02: 2019.03.23 2022.08.30: 2022.08.30 datasource: 2022.08.30 description: Gene description from NIH's NCBI Gene Info developer: citation: Wheeler, D. L., Barrett, T., Benson, D. A., Bryant, S. H., et al. (2006). Database resources of the national center for biotechnology information. Nucleic acids research, 35(suppl_1), D5-D12. email: '' name: NIH organization: NIH website: https://www.ncbi.nlm.nih.gov/gene groups: [] has_logo: true hidden: false latest_version: 2022.08.30 publish_time: 2022-08-31T17:58:08.530489+0000 requires: - wgncbigene size: 20688903 tags: - genes - literature title: NCBI Gene type: annotator versions: - 2018.02.21 - 2018.02.211 - 2018.02.213 - 2019.02.006 - 2019.03.23 - 2019.05.13 - 2019.08.02 - 2022.08.30 ncer: code_size: 50990 commercial_warning: null data_size: 14529298432 data_sources: 1.0.0: v2 2022.09.22: 2022.09.22 data_versions: 1.0.0: 1.0.0 2022.09.22: 2022.09.22 datasource: 2022.09.22 description: ncER has a good performance for the identification of deleterious variants in the non-coding genome. ncER can also identify non-coding regions associated with cell viability, an in vitro surrogate of essentiality9, and with regulation of an essential gene. developer: citation: Wells, A., Heckerman, D., Torkamani, A. et al. Ranking of non-coding pathogenic variants and putative essential regions of the human genome. Nat Commun 10, 5241 (2019). https://doi.org/10.1038/s41467-019-13212-3 email: support@cravat.us name: '' organization: Department of Integrative Structural and Computational Biology, The Scripps Research Institute website: https://github.com/TelentiLab/ncER_datasets groups: [] has_logo: true hidden: false latest_version: 2022.09.22 publish_time: 2022-09-27T16:48:00.143889+0000 requires: null size: 14529349422 tags: - non coding title: 'ncER: non-coding essential regulation' type: annotator versions: - 1.0.0 - 2022.09.22 ncrna: code_size: 72911 commercial_warning: null data_size: 5773839 data_sources: 2014.1.10: null 2014.1.102: hg38 2019.02.006: hg38 2019.05.13: hg38 2019.08.19: hg38 2022.12.12: hg38 data_versions: 2014.1.10: 2014.1.10 2014.1.102: 2014.1.10 2019.02.006: 2014.1.10 2019.05.13: 2019.05.13 2019.08.19: 2019.05.13 2022.12.12: 2019.05.13 datasource: hg38 description: Non-coding RNA from RepeatMasker library developer: citation: Bao, W., Kojima, K. K., & Kohany, O. (2015). Repbase Update, a database of repetitive elements in eukaryotic genomes. Mobile DNA, 6(1), 11. email: '' name: Genetic Information Research Institute organization: Genetic Information Research Institute website: https://www.girinst.org/server/RepBase/index.php groups: [] has_logo: true hidden: false latest_version: 2022.12.12 publish_time: 2019-01-30T20:42:51.131258+0000 requires: - wgncrna size: 5846750 tags: - non coding title: ncRNA type: annotator versions: - 2014.1.10 - 2014.1.102 - 2019.02.006 - 2019.05.13 - 2019.08.19 - 2022.12.12 ndex: code_size: 205130 commercial_warning: For commercial users, contact the source databases and purchase an appropriate license if necessary. Screen reader support enabled. data_size: 590848 data_sources: 4.0.0: null 4.0.10: v2 4.0.11: v2 4.0.2: null 4.0.3: v2 4.0.4: v2 4.0.5: v2 4.0.6: v2 4.0.7: v2 4.0.9: v2 data_versions: 4.0.0: 4.0.0 4.0.10: 4.0.0 4.0.11: 4.0.0 4.0.2: 4.0.0 4.0.3: 4.0.0 4.0.4: 4.0.0 4.0.5: 4.0.0 4.0.6: 4.0.0 4.0.7: 4.0.0 4.0.9: 4.0.0 datasource: v2 description: Network Data Exchange developer: citation: Pratt, D., Chen, J., Welker, D., et al. (2015). NDEx, the network data exchange. Cell systems, 1(4), 302-305. email: '' name: The Cytoscape Consortium organization: The Cytoscape Consortium website: http://home.ndexbio.org/index/ groups: - ndex_group has_logo: true hidden: false latest_version: 4.0.11 publish_time: 2019-01-30T01:56:40.452873+0000 requires: - wgndex - ndex_group - wgndexsummary size: 795978 tags: - genes - visualization title: NDEx NCI Cancer Pathways type: annotator versions: - 4.0.0 - 4.0.2 - 4.0.3 - 4.0.4 - 4.0.5 - 4.0.6 - 4.0.7 - 4.0.9 - 4.0.10 - 4.0.11 ndex_signor: code_size: 224172 commercial_warning: null data_size: 102400 data_sources: 1.0.0: v2 data_versions: 1.0.0: 1.0.0 datasource: v2 description: Network Data Exchange SIGNOR Pathways developer: citation: Pratt, D., Chen, J., Welker, D., et al. (2015). NDEx, the network data exchange. Cell systems, 1(4), 302-305. email: '' name: The Cytoscape Consortium organization: The Cytoscape Consortium website: http://home.ndexbio.org/index/ groups: - ndex_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-18T00:46:34.699489+0000 requires: - wgndex_signor - ndex_group size: 326572 tags: - variants - genes - cancer - interactions title: NDEx SIGNOR type: annotator versions: - 1.0.0 oldcravat-converter: code_size: 9272 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null 1.1.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null 1.1.2: null datasource: null description: File converter for old architecture cravat input developer: email: kmoad@insilico.us.com itation: '' name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.2 publish_time: '2019-01-07T22:43:03.000000' requires: null size: 9272 tags: null title: OldCravat Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 - 1.1.2 omim: code_size: 26688 commercial_warning: null data_size: 10360836 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: Online Mendelian Inheritance in Man. Catalog of human genes and genetic disorders and traits. developer: citation: 'Amberger JS, Bocchini CA, Scott AF, Hamosh A. OMIM.org: leveraging knowledge across phenotype-gene relationships. Nucleic Acids Res. 2019 Jan 8;47(D1):D1038-D1043. doi:10.1093/nar/gky1151. PMID: 30445645.' email: support@cravat.us name: Johns Hopkins University organization: Johns Hopkins University website: https://omim.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T19:10:57.862193+0000 requires: null size: 10387524 tags: - variants - clinical relevance title: OMIM type: annotator versions: - 1.0.0 pharmgkb: code_size: 30016 commercial_warning: null data_size: 1560434 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: null description: Clinically actionable gene-drug associations and genotype-phenotype relationships developer: citation: 'M. Whirl-Carrillo, E.M. McDonagh, J. M. Hebert, L. Gong, K. Sangkuhl, C.F. Thorn, R.B. Altman and T.E. Klein. "Pharmacogenomics Knowledge for Personalized Medicine" Clinical Pharmacology & Therapeutics (2012) 92(4): 414-417' email: feedback@pharmgkb.org name: Teri E. Klein organization: Shriram Center for Bioengineering and Chemical Engineering website: https://www.pharmgkb.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-08-21T19:11:49.283863+0000 requires: - wgpharmgkb size: 1590450 tags: - variants - clinical relevance - cancer - cardiovascular - literature title: PharmGKB type: annotator versions: - 1.0.0 - 1.1.0 phastcons: code_size: 118453 commercial_warning: null data_size: 6330222596 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.04: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 3.5.9: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.04 3.5.5: 3.5.04 3.5.6: 3.5.04 3.5.7: 3.5.04 3.5.8: 3.5.04 3.5.9: 3.5.04 datasource: dbNSFP v4.0b1 description: A database of compressed phastCons conservation scores. developer: citation: Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R., & Siepel, A. (2010). Detection of nonneutral substitution rates on mammalian phylogenies. Genome research, 20(1), 110-121. email: support@cravat.us name: UCSC organization: University of California Santa Cruz Genomics Institute website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 3.5.9 publish_time: 2019-01-30T18:43:56.366250+0000 requires: - wgphastcons size: 6330341049 tags: - variants - evolution title: Phast Cons type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.5 - 3.5.6 - 3.5.7 - 3.5.8 - 3.5.9 phdsnpg: code_size: 20155 commercial_warning: null data_size: 5253156864 data_sources: 0.0.2: null 0.0.4: null 0.0.5: dbNSFP v4.0b1 0.0.6: dbNSFP v4.0b1 0.0.7: dbNSFP v4.0b1 0.0.8: dbNSFP v4.0b1 0.0.9: dbNSFP v4.0b1 data_versions: 0.0.2: 0.0.2 0.0.4: 0.0.2 0.0.5: 0.0.2 0.0.6: 0.0.2 0.0.7: 0.0.2 0.0.8: 0.0.2 0.0.9: 0.0.2 datasource: dbNSFP v4.0b1 description: A binary classifier for predicting pathogenic variants in coding and non-coding regions. developer: citation: 'Capriotti, E., & Fariselli, P. (2017). PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide variants. Nucleic acids research, 45(W1), W247-W252.' email: emidio.capriotti@unibo.it name: Emidio Capriotti organization: University of Bologna website: http://snps.biofold.org/phd-snpg/index.html groups: [] has_logo: true hidden: false latest_version: 0.0.9 publish_time: 2019-01-30T18:44:04.627754+0000 requires: - wgphdsnpg size: 5253177019 tags: - variant effect prediction title: PhD-SNPg type: annotator versions: - 0.0.2 - 0.0.4 - 0.0.5 - 0.0.6 - 0.0.7 - 0.0.8 - 0.0.9 phi: code_size: 29954 commercial_warning: null data_size: 698372 data_sources: 3.5.0: 3.5.0 3.5.1: dbNSFP v4.0b1 3.5.2: dbNSFP v4.0b1 3.5.3: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.6.0: dbNSFP v4.0b1 3.6.1: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: 3.5.0 3.5.3: 3.5.0 3.5.4: 3.5.0 3.6.0: 3.6.0 3.6.1: 3.6.0 datasource: dbNSFP v4.0b1 description: Providing probabilities for gene-based haploinsufficiency developer: citation: Huang, N., Lee, I., Marcotte, E. M., & Hurles, M. E. (2010). Characterising and predicting haploinsufficiency in the human genome. PLoS genetics, 6(10), e1001154. email: support@cravat.us name: Ni Huang, Insuk Lee, Edward M. Marcotte, Matthew E. Hurles organization: Wellcome Trust Sanger Institute website: https://doi.org/10.1371/journal.pgen.1001154 groups: [] has_logo: true hidden: false latest_version: 3.6.1 publish_time: 2019-01-30T18:44:14.269915+0000 requires: null size: 728326 tags: - genes title: p(HI) type: annotator versions: - 3.5.0 - 3.5.1 - 3.5.2 - 3.5.3 - 3.5.4 - 3.6.0 - 3.6.1 phylop: code_size: 240247 commercial_warning: null data_size: 14198614020 data_sources: 3.5.0: null 3.5.01: null 3.5.02: null 3.5.03: hg38 3.5.04: hg38 3.5.05: hg38 3.5.10: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 3.5.9: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.0 3.5.05: 3.5.05 3.5.10: 3.5.05 3.5.6: 3.5.05 3.5.7: 3.5.05 3.5.8: 3.5.05 3.5.9: 3.5.05 datasource: dbNSFP v4.0b1 description: A database providing conservation scoring by phylogenetic p-values developer: citation: Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R., & Siepel, A. (2010). Detection of nonneutral substitution rates on mammalian phylogenies. Genome research, 20(1), 110-121. email: support@cravat.us name: UCSC organization: University of California Santa Cruz Genomics Institute website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 3.5.10 publish_time: 2019-03-23T18:13:12.105921+0000 requires: - wgphylop size: 14198854267 tags: - variants - evolution title: PhyloP type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.05 - 3.5.6 - 3.5.7 - 3.5.8 - 3.5.9 - 3.5.10 polyphen2: code_size: 25378 commercial_warning: Freely available for non-commercial use. data_size: 6057283584 data_sources: 1.0.0: '2' data_versions: 1.0.0: 1.0.0 datasource: '2' description: PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations developer: citation: Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. Nat Methods 7(4):248-249 (2010). email: iadzhubey@rics.bwh.harvard.edu name: Ivan A Adzhubei organization: Brigham and Women's Hospital website: http://genetics.bwh.harvard.edu/pph2/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-11-10T20:40:26.274775+0000 requires: null size: 6057308962 tags: - variant effect prediction title: PolyPhen-2 type: annotator versions: - 1.0.0 prec: code_size: 34355 commercial_warning: null data_size: 575492 data_sources: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: dbNSFP v4.0b1 3.5.3: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.6.0: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: 3.5.0 3.5.3: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 3.5.6: 3.5.0 3.5.7: 3.5.0 3.6.0: 3.6.0 datasource: dbNSFP v4.0b1 description: Providing probabilities for LoF alleles developer: citation: MacArthur, D. G., Balasubramanian, S., Frankish, A., et al. (2012). A systematic survey of loss-of-function variants in human protein-coding genes. Science, 335(6070), 823-828. email: support@cravat.us name: Daniel G. MacArthur organization: Wellcome Trust Sanger Institute website: https://doi.org/10.1126/science.1215040 groups: [] has_logo: true hidden: false latest_version: 3.6.0 publish_time: '2019-01-28T21:42:44.000000' requires: - wgprec size: 609847 tags: - genes title: P(rec) type: annotator versions: - 3.5.0 - 3.5.1 - 3.5.2 - 3.5.3 - 3.5.4 - 3.5.5 - 3.5.6 - 3.5.7 - 3.6.0 pseudogene: code_size: 44572 commercial_warning: null data_size: 1335837 data_sources: 1.0.0: null 27.0.0: null 27.0.1: null 27.0.2: null 27.0.3: null 27.0.4: hg38 27.0.5: hg38 27.0.6: hg38 28.0.1: hg38 42.0.1: hg38 data_versions: 1.0.0: 1.0.0 27.0.0: 1.0.0 27.0.1: 1.0.0 27.0.2: 1.0.0 27.0.3: 1.0.0 27.0.4: 1.0.0 27.0.5: 1.0.0 27.0.6: 1.0.0 28.0.1: 28.0.1 42.0.1: 42.0.1 datasource: hg38 description: Pseudogenes from UCSC hg38 wgEncodeGencodePseudoGeneV27 developer: citation: 'Harrow, J., Frankish, A., Gonzalez, J. M., Tapanari, E., Diekhans, M., Kokocinski, F., ... & Barnes, I. (2012). GENCODE: the reference human genome annotation for The ENCODE Project. Genome research, 22(9), 1760-1774.' email: '' name: UCSC organization: UCSC website: https://www.gencodegenes.org/ groups: [] has_logo: true hidden: false latest_version: 42.0.1 publish_time: 2019-01-30T18:44:48.081851+0000 requires: - wgpseudogene size: 1380409 tags: - non coding title: Pseudogene type: annotator versions: - 1.0.0 - 27.0.0 - 27.0.1 - 27.0.2 - 27.0.3 - 27.0.4 - 27.0.5 - 27.0.6 - 28.0.1 - 42.0.1 pubmed: code_size: 47739 commercial_warning: null data_size: 933888 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.1.5: 1.0.0 datasource: null description: PubMed articles related to a particular gene developer: citation: '' email: pubmedcentral@ncbi.nlm.nih.gov name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/pubmed groups: [] has_logo: true hidden: false latest_version: 1.1.5 publish_time: '2018-09-27T17:48:28.000000' requires: null size: 981627 tags: - literature title: PubMed type: annotator versions: - 1.0.0 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 regulomedb: code_size: 90311 commercial_warning: null data_size: 1067202564 data_sources: 1.0.0: v2.0 1.0.1: v2.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v2.0 description: Identifies DNA features and regulatory elements in non-coding regions of the human genome. developer: citation: 'Boyle AP, Hong EL, Hariharan M, Cheng Y, Schaub MA, Kasowski M, Karczewski KJ, Park J, Hitz BC, Weng S, Cherry JM, Snyder M. Annotation of functional variation in personal genomes usingRegulomeDB. Genome Research 2012, 22(9):1790-1797. PMID: 22955989.' email: support@cravat.us name: '' organization: Stanford University website: https://www.regulomedb.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-03-31T15:14:10.837161+0000 requires: null size: 1067292875 tags: - non coding title: RegulomeDB type: annotator versions: - 1.0.0 - 1.0.1 repeat: code_size: 69574 commercial_warning: null data_size: 366328832 data_sources: 2014.1.10: null 2014.1.101: null 2014.1.102: null 2014.1.104: hg38 2019.05.13: hg38 2019.08.02: hg38 2019.08.22: hg38 2019.2.060: hg38 2020.10.16: hg38 data_versions: 2014.1.10: 2014.1.10 2014.1.101: 2014.1.10 2014.1.102: 2014.1.10 2014.1.104: 2014.1.10 2019.05.13: 2014.1.10 2019.08.02: 2014.1.10 2019.08.22: 2014.1.10 2019.2.060: 2014.1.10 2020.10.16: 2014.1.10 datasource: hg38 description: Repeating elements from RepeatMasker and Simple Repeat tracks of UCSC hg38 database. UCSC Genome Browser Tracks rmsk and simpleRepeat were used to obtain Low complexity, SINE, LINE, LTR, Simple Repeat, and Satellite data and they were combined. developer: citation: 'Haeussler, M., Zweig, A. S., Tyner, C., et al. (2018). The UCSC Genome Browser database: 2019 update. Nucleic acids research, 47(D1), D853-D858.' email: '' name: null organization: UCSC website: http://genome.ucsc.edu groups: [] has_logo: true hidden: false latest_version: 2020.10.16 publish_time: 2019-01-30T18:45:06.202135+0000 requires: null size: 366398406 tags: - non coding title: Repeat Sequences type: annotator versions: - 2014.1.10 - 2014.1.101 - 2014.1.102 - 2014.1.104 - 2019.2.060 - 2019.05.13 - 2019.08.02 - 2019.08.22 - 2020.10.16 revel: code_size: 210866 commercial_warning: For commercial use, contact xmliu.uth@gmail.com data_size: 2998312960 data_sources: 2016.06.03: 2016.06.03 2016.06.04: 2016.06.03 2019.02.06: 2016.06.03 2019.03.20: 2016.06.03 2019.03.27: 2019.03.27 2019.05.13: '2017-06-21' data_versions: 2016.06.03: 2016.06.03 2016.06.04: 2016.06.03 2019.02.06: 2016.06.03 2019.03.20: 2016.06.03 2019.03.27: 2019.03.27 2019.05.13: 2019.03.27 datasource: '2017-06-21' description: Rare Exome Variant Ensemble Learner developer: citation: 'Ioannidis, N. M., Rothstein, J. H., Pejaver, V., et al. (2016). REVEL: an ensemble method for predicting the pathogenicity of rare missense variants. The American Journal of Human Genetics, 99(4), 877-885.' email: joseph.rothstein@mssm.edu name: Joe Rothstein organization: Icahn School of Medicine at Mount Sinai website: https://sites.google.com/site/revelgenomics/ groups: [] has_logo: true hidden: false latest_version: 2019.05.13 publish_time: 2020-08-21T19:20:19.348073+0000 requires: - wgrevel size: 2998523826 tags: - variant effect prediction title: REVEL type: annotator versions: - 2016.06.03 - 2016.06.04 - 2019.02.06 - 2019.03.20 - 2019.03.27 - 2019.05.13 rvis: code_size: 28557 commercial_warning: null data_size: 1353732 data_sources: 3.0.0: null 3.0.01: null 3.0.02: null 3.0.03: null 3.0.04: v3 3.0.05: v3 3.0.6: v3 3.0.7: v3 3.0.8: v3 3.1.0: v3 data_versions: 3.0.0: 3.0.0 3.0.01: 3.0.0 3.0.02: 3.0.0 3.0.03: 3.0.0 3.0.04: 3.0.0 3.0.05: 3.0.0 3.0.6: 3.0.0 3.0.7: 3.0.0 3.0.8: 3.0.0 3.1.0: 3.1.0 datasource: v3 description: Residual variation intolerance scoring developer: citation: Petrovski, S., Wang, Q., Heinzen, E. L., Allen, A. S., & Goldstein, D. B. (2013). Genic intolerance to functional variation and the interpretation of personal genomes. PLoS genetics, 9(8), e1003709. email: support@cravat.us name: "Slav\xE9 Petrovski, Quanli Wang, Erin L. Heinzen, Andrew S. Allen, David\ \ B. Goldstein" organization: Center for Human Genome Variation, Duke University website: https://doi.org/10.1371/journal.pgen.1003709 groups: [] has_logo: true hidden: false latest_version: 3.1.0 publish_time: 2019-01-30T18:45:23.421954+0000 requires: - wgrvis size: 1382289 tags: - genes title: RVIS type: annotator versions: - 3.0.0 - 3.0.01 - 3.0.02 - 3.0.03 - 3.0.04 - 3.0.05 - 3.0.6 - 3.0.7 - 3.0.8 - 3.1.0 segway: code_size: 164238 commercial_warning: null data_size: 8093696 data_sources: 1.0.0: null 1.2.0: null 1.2.1: null data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 1.2.1: 1.0.0 datasource: null description: Chromatin state activity scores developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.1 publish_time: 2020-09-12T20:08:49.525614+0000 requires: - segway_group size: 8257934 tags: - variants - non coding title: Segway type: annotator versions: - 1.0.0 - 1.2.0 - 1.2.1 segway_adrenal: code_size: 11669 commercial_warning: null data_size: 318869504 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Adrenal tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:09:37.106540+0000 requires: - segway_group size: 318881173 tags: - non coding title: Segway Adrenal type: annotator versions: - 1.0.0 - 1.2.0 segway_blood: code_size: 18175 commercial_warning: null data_size: 10196074496 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Blood tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:10:24.447585+0000 requires: - segway_group size: 10196092671 tags: - non coding title: Segway Blood type: annotator versions: - 1.0.0 - 1.2.0 segway_brain: code_size: 20613 commercial_warning: null data_size: 4480552960 data_sources: 1.0.0: 2019.09.01 1.1.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Brain tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:11:11.639143+0000 requires: - segway_group size: 4480573573 tags: - non coding title: Segway Brain type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 segway_breast: code_size: 11957 commercial_warning: null data_size: 691527680 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Breast tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:11:58.740914+0000 requires: - segway_group size: 691539637 tags: - non coding title: Segway Breast type: annotator versions: - 1.0.0 - 1.2.0 segway_esc: code_size: 12787 commercial_warning: null data_size: 1872506880 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Esc tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:12:46.087067+0000 requires: - segway_group size: 1872519667 tags: - non coding title: Segway Esc type: annotator versions: - 1.0.0 - 1.2.0 segway_esc_derived: code_size: 14605 commercial_warning: null data_size: 5715992576 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Esc Derived tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:13:33.407910+0000 requires: - segway_group size: 5716007181 tags: - non coding title: Segway Esc Derived type: annotator versions: - 1.0.0 - 1.2.0 segway_fat: code_size: 12045 commercial_warning: null data_size: 1032069120 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Fat tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:14:20.790696+0000 requires: - segway_group size: 1032081165 tags: - non coding title: Segway Fat type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_colon: code_size: 12223 commercial_warning: null data_size: 1098141696 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Colon tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:15:08.176627+0000 requires: - segway_group size: 1098153919 tags: - non coding title: Segway GI Colon type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_duodenum: code_size: 11974 commercial_warning: null data_size: 908914688 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Duodenum tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:15:55.361222+0000 requires: - segway_group size: 908926662 tags: - non coding title: Segway GI Duodenum type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_intestine: code_size: 11988 commercial_warning: null data_size: 777023488 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Intestine tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:16:42.646577+0000 requires: - segway_group size: 777035476 tags: - non coding title: Segway GI Intestine type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_rectum: code_size: 12287 commercial_warning: null data_size: 1451003904 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Rectum tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:17:30.113048+0000 requires: - segway_group size: 1451016191 tags: - non coding title: Segway GI Rectum type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_stomach: code_size: 12493 commercial_warning: null data_size: 1518788608 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Stomach tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:18:17.380751+0000 requires: - segway_group size: 1518801101 tags: - non coding title: Segway GI Stomach type: annotator versions: - 1.0.0 - 1.2.0 segway_group: code_size: 6882 commercial_warning: null data_size: 0 data_sources: 1.0.0: 2019.09 data_versions: 1.0.0: null datasource: 2019.09 description: Chromatin state annotations from Segway developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-09-12T20:38:14.401354+0000 requires: null size: 6882 tags: - non coding title: Segway type: group versions: - 1.0.0 segway_heart: code_size: 12473 commercial_warning: null data_size: 1492787200 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Heart tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:19:05.928121+0000 requires: - segway_group size: 1492799673 tags: - non coding title: Segway Heart type: annotator versions: - 1.0.0 - 1.2.0 segway_ipsc: code_size: 12807 commercial_warning: null data_size: 2085855232 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Ipsc tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:19:53.460029+0000 requires: - segway_group size: 2085868039 tags: - non coding title: Segway Ipsc type: annotator versions: - 1.0.0 - 1.2.0 segway_kidney: code_size: 11649 commercial_warning: null data_size: 493993984 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Kidney tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:20:40.781153+0000 requires: - segway_group size: 494005633 tags: - non coding title: Segway Kidney type: annotator versions: - 1.0.0 - 1.2.0 segway_liver: code_size: 11637 commercial_warning: null data_size: 367927296 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Liver tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:21:27.900970+0000 requires: - segway_group size: 367938933 tags: - non coding title: Segway Liver type: annotator versions: - 1.0.0 - 1.2.0 segway_lung: code_size: 11633 commercial_warning: null data_size: 368173056 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Lung tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:22:15.165440+0000 requires: - segway_group size: 368184689 tags: - non coding title: Segway Lung type: annotator versions: - 1.0.0 - 1.2.0 segway_muscle: code_size: 12269 commercial_warning: null data_size: 1135779840 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Muscle tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:23:02.628756+0000 requires: - segway_group size: 1135792109 tags: - non coding title: Segway Muscle type: annotator versions: - 1.0.0 - 1.2.0 segway_muscle_leg: code_size: 11672 commercial_warning: null data_size: 297504768 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Muscle Leg tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:23:50.095197+0000 requires: - segway_group size: 297516440 tags: - non coding title: Segway Muscle Leg type: annotator versions: - 1.0.0 - 1.2.0 segway_ovary: code_size: 11621 commercial_warning: null data_size: 342245376 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Ovary tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:24:37.436427+0000 requires: - segway_group size: 342256997 tags: - non coding title: Segway Ovary type: annotator versions: - 1.0.0 - 1.2.0 segway_placenta: code_size: 11942 commercial_warning: null data_size: 822734848 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Placenta tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:25:24.640069+0000 requires: - segway_group size: 822746790 tags: - non coding title: Segway Placenta type: annotator versions: - 1.0.0 - 1.2.0 segway_skin: code_size: 13638 commercial_warning: null data_size: 2971197440 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Skin tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:26:12.111781+0000 requires: - segway_group size: 2971211078 tags: - non coding title: Segway Skin type: annotator versions: - 1.0.0 - 1.2.0 segway_stromal_connective: code_size: 12289 commercial_warning: null data_size: 1325142016 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Stromal Connective tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:27:00.004560+0000 requires: - segway_group size: 1325154305 tags: - non coding title: Segway Stromal Connective type: annotator versions: - 1.0.0 - 1.2.0 segway_thymus: code_size: 11905 commercial_warning: null data_size: 714776576 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Thymus tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:27:47.185959+0000 requires: - segway_group size: 714788481 tags: - non coding title: Segway Thymus type: annotator versions: - 1.0.0 - 1.2.0 segway_vascular: code_size: 11633 commercial_warning: null data_size: 296783872 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Vascular tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:28:34.447763+0000 requires: - segway_group size: 296795505 tags: - non coding title: Segway Vascular type: annotator versions: - 1.0.0 - 1.2.0 sift: code_size: 19619 commercial_warning: Freely available to the academic community. Commercial licensees should contact Steven Henikoff. data_size: 14824480768 data_sources: 1.0.0: SIFT4G 2016-02-22 data_versions: 1.0.0: 1.0.0 datasource: SIFT4G 2016-02-22 description: SIFT predicts whether an amino acid substitution affects protein function developer: citation: 'Vaser R, Adusumalli S, Leng SN, Sikic M, Ng PC (2016) SIFT missense predictions for genomes. Nat Protocols 11: 1-9.' email: ngpc4@gis.a-star.edu.sg name: Pauline Ng organization: Bioinformatics Institute, Agency for Science, Technology and Research, Singapore website: sift.bii.a-star.edu.sg groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-11-10T20:41:21.626925+0000 requires: null size: 14824500387 tags: - variant effect prediction title: SIFT type: annotator versions: - 1.0.0 siphy: code_size: 45812 commercial_warning: null data_size: 5569429504 data_sources: 3.5.0: 3.5.0 3.5.1: dbNSFP v4.0b1 3.5.2: dbNSFP v4.0b1 3.5.3: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: 3.5.0 3.5.3: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 datasource: dbNSFP v4.0b1 description: A database of conservation scores based on 29 mammal genomes developer: citation: Lindblad-Toh, K., Garber, M., Zuk, et al. (2011). A high-resolution map of human evolutionary constraint using 29 mammals. Nature, 478(7370), 476. email: support@cravat.us name: '' organization: Broad Institute website: https://www.broadinstitute.org/mammals-models/29-mammals-project groups: [] has_logo: true hidden: false latest_version: 3.5.5 publish_time: 2019-01-30T18:45:33.527748+0000 requires: - wgsiphy size: 5569475316 tags: - variants - evolution title: SiPhy type: annotator versions: - 3.5.0 - 3.5.1 - 3.5.2 - 3.5.3 - 3.5.4 - 3.5.5 spliceai: code_size: 216726 commercial_warning: Freely available for non-commercial use. data_size: 1808545796 data_sources: 1.0.0: v4.0 data_versions: 1.0.0: 1.0.0 datasource: v4.0 description: A deep neural network that accurately predicts splice junctions from an arbitrary pre-mRNA transcript sequence, enabling precise prediction of noncoding genetic variants that cause cryptic splicing. developer: citation: 'Jaganathan, Kishore, et al. "Predicting splicing from primary sequence with deep learning." Cell 176.3 (2019): 535-548.' email: support@cravat.us name: illumina organization: illumina website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:52:57.738041+0000 requires: null size: 1808762522 tags: - variant effect prediction title: SpliceAI type: annotator versions: - 1.0.0 stdoutreporter: code_size: 1069 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: STDOUT reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.1 publish_time: 2020-07-14T13:33:05.362044+0000 requires: null size: 1069 tags: - reporters title: STDOUT Reporter type: reporter versions: - 1.0.0 - 1.0.1 swissprot_ptm: code_size: 412924 commercial_warning: null data_size: 2189316 data_sources: 1.0.0: 2018.04.10 1.0.1: 2018.04.10 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: 2018.04.10 description: A high quality manually annotated protein sequence database, specifying in post-translational modifications (PTMs). developer: citation: 'Khoury, George A., Richard C. Baliban, and Christodoulos A. Floudas. "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database." Scientific reports 1 (2011): 90.' email: support@cravat.us name: The UniProt Consortium organization: The UniProt Consortium website: https://www.uniprot.org/help/mod_res groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-09-16T14:25:49.598159+0000 requires: - wgswissprot_ptm size: 2602240 tags: - functional studies title: Swiss-Prot PTM type: annotator versions: - 1.0.0 - 1.0.1 tagsampler: code_size: 3257 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.11: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.0.8: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null data_versions: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.11: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.0.8: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null datasource: null description: Aggregates tags and samples developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.5 publish_time: '2018-07-24T19:44:47.000000' requires: null size: 3257 tags: null title: Tag Sampler type: postaggregator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.10 - 1.0.11 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 target: code_size: 35496 commercial_warning: null data_size: 26628 data_sources: 1.0.0: null 3.0.0: null 3.0.1: null 3.0.11: 3.0.1 3.0.12: 3.0.1 3.0.13: v3.0.1 3.0.14: v3.0.1 3.0.15: v3.0.1 3.0.16: v3.0.1 3.0.17: v3.0.1 3.1.0: v3.0.1 data_versions: 1.0.0: 1.0.0 3.0.0: 1.0.0 3.0.1: 1.0.0 3.0.11: 1.0.0 3.0.12: 1.0.0 3.0.13: 1.0.0 3.0.14: 1.0.0 3.0.15: 1.0.0 3.0.16: 1.0.0 3.0.17: 1.0.0 3.1.0: 3.1.0 datasource: v3.0.1 description: Tumor Alterations Relevant for GEnomics-driven Therapy developer: citation: Van Allen, E. M., Wagle, N., Stojanov, P., et al. (2014). Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. Nature medicine, 20(6), 682. email: support@cravat.us name: Broad Institute organization: Broad Institute website: https://software.broadinstitute.org/cancer/cga/target groups: [] has_logo: true hidden: false latest_version: 3.1.0 publish_time: 2019-01-30T18:45:59.292148+0000 requires: - wgtarget size: 62124 tags: - genes - cancer title: TARGET type: annotator versions: - 1.0.0 - 3.0.0 - 3.0.1 - 3.0.11 - 3.0.12 - 3.0.13 - 3.0.14 - 3.0.15 - 3.0.16 - 3.0.17 - 3.1.0 textreporter: code_size: 275347 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null datasource: null description: Text format reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.7 publish_time: '2018-08-14T15:06:06.000000' requires: null size: 275347 tags: - reporters title: Text Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 thousandgenomes: code_size: 418687 commercial_warning: null data_size: 5291798528 data_sources: 1.0.0: null 3.0.0: null 3.0.1: null 3.0.2: null 3.0.3: null 3.0.4: Phase 3 3.0.5: Phase 3 3.1.0: Phase 3 4.0.1: Phase 3 4.0.2: Phase 3 4.0.4: Phase 3 4.0.5: Phase 3 4.1.0: Phase 3 data_versions: 1.0.0: 1.0.0 3.0.0: 1.0.0 3.0.1: 1.0.0 3.0.2: 1.0.0 3.0.3: 1.0.0 3.0.4: 1.0.0 3.0.5: 1.0.0 3.1.0: 3.1.0 4.0.1: 3.1.0 4.0.2: 4.0.2 4.0.4: 4.0.2 4.0.5: 4.0.2 4.1.0: 4.0.2 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.0 publish_time: 2019-01-30T18:46:33.377326+0000 requires: - wgthousandgenomes - thousandgenomes_group size: 5292217215 tags: - allele frequency title: 1000 Genomes type: annotator versions: - 1.0.0 - 3.0.0 - 3.0.1 - 3.0.2 - 3.0.3 - 3.0.4 - 3.0.5 - 3.1.0 - 4.0.1 - 4.0.2 - 4.0.4 - 4.0.5 - 4.1.0 thousandgenomes_ad_mixed_american: code_size: 513507 commercial_warning: null data_size: 4097593344 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T18:59:59.557670+0000 requires: - thousandgenomes_group - wgthousandgenomes_ad_mixed_american size: 4098106851 tags: - allele frequency title: 1000 Genomes-Ad Mixed American type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 thousandgenomes_african: code_size: 418607 commercial_warning: null data_size: 5269155840 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 3.1.4: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 3.1.4: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:00:17.976738+0000 requires: - thousandgenomes_group - wgthousandgenomes_african size: 5269574447 tags: - allele frequency title: 1000 Genomes-African type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 3.1.4 - 4.1.0 - 4.1.1 thousandgenomes_east_asian: code_size: 418145 commercial_warning: null data_size: 4120207360 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:00:35.927973+0000 requires: - thousandgenomes_group - wgthousandgenomes_east_asian size: 4120625505 tags: - allele frequency title: 1000 Genomes-East Asian type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 thousandgenomes_european: code_size: 418125 commercial_warning: null data_size: 4173643776 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:00:53.753998+0000 requires: - thousandgenomes_group - wgthousandgenomes_european size: 4174061901 tags: - allele frequency title: 1000 Genomes-European type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 thousandgenomes_group: code_size: 17638 commercial_warning: null data_size: 0 data_sources: 3.1.0: Phase 3 data_versions: 3.1.0: null datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: [] has_logo: true hidden: false latest_version: 3.1.0 publish_time: 2020-12-15T14:59:07.076714+0000 requires: null size: 17638 tags: - allele frequency title: 1000 Genomes type: group versions: - 3.1.0 thousandgenomes_south_asian: code_size: 418090 commercial_warning: null data_size: 4243808256 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:15:43.009947+0000 requires: - thousandgenomes_group - wgthousandgenomes_south_asian size: 4244226346 tags: - allele frequency title: 1000 Genomes-South Asian type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 trinity: code_size: 115052 commercial_warning: null data_size: 59396 data_sources: 1.0.0: 26 February 2020 data_versions: 1.0.0: 1.0.0 datasource: 26 February 2020 description: Trinity assembles transcript sequences from Illumina RNA-Seq data. developer: citation: 'Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883. PubMed PMID: 21572440.' email: support@cravat.us name: Broad Institute organization: Broad Institute website: https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/MUTATION_LIB_SUPPLEMENT/rna_editing/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T19:26:15.735084+0000 requires: null size: 174448 tags: - non coding title: Trinity CTAT type: annotator versions: - 1.0.0 tsvreporter: code_size: 11357 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.7: null 1.0.8: null 1.0.9: null data_versions: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.7: null 1.0.8: null 1.0.9: null datasource: null description: Tab-delimited format text file reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.10 publish_time: 2019-06-12T17:11:00.368964+0000 requires: null size: 11357 tags: - reporters title: TSV Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.4 - 1.0.5 - 1.0.7 - 1.0.8 - 1.0.9 - 1.0.10 uk10k_cohort: code_size: 57635 commercial_warning: null data_size: 16308228 data_sources: 3.5.0: null 3.5.01: null 3.5.02: null 3.5.03: null 3.5.04: dbNSFP v4.0b1 3.5.05: dbNSFP v4.0b1 3.5.06: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 3.5.9: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.0 3.5.05: 3.5.0 3.5.06: 3.5.06 3.5.7: 3.5.06 3.5.8: 3.5.06 3.5.9: 3.5.06 datasource: dbNSFP v4.0b1 description: UK10K cohort provides genetic information from DTR & ALSPAC developer: citation: UK10K consortium. (2015). The UK10K project identifies rare variants in health and disease. 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1.0.17 - 1.0.18 - 1.0.19 vest: code_size: 1379372 commercial_warning: Freely available for non-commercial use. data_size: 9748356693 data_sources: 4.0.0: null 4.0.1: null 4.0.2: v4 4.0.4: v4 4.0.5: v4 4.0.6: v4 4.0.7: v4 4.0.8: v4 4.0.9: v4 4.1.0: v4 4.1.1: v4 4.1.2: v4 4.2.0: v4 4.3.0: v4 4.3.1: v4 data_versions: 4.0.0: 4.0.0 4.0.1: 4.0.0 4.0.2: 4.0.0 4.0.4: 4.0.0 4.0.5: 4.0.0 4.0.6: 4.0.0 4.0.7: 4.0.0 4.0.8: 4.0.0 4.0.9: 4.0.0 4.1.0: 4.0.0 4.1.1: 4.0.0 4.1.2: 4.0.0 4.2.0: 4.0.0 4.3.0: 4.0.0 4.3.1: 4.0.0 datasource: v4 description: VEST annotation developer: citation: Douville, C., Masica, D. L., Stenson, P. D., et al. (2016). Assessing the pathogenicity of insertion and deletion variants with the variant effect scoring tool (VEST-Indel). Human mutation, 37(1), 28-35. email: '' name: Johns Hopkins University - Karchin Lab organization: Johns Hopkins University - Karchin Lab website: http://karchinlab.org/apps/appVest.html groups: [] has_logo: true hidden: false latest_version: 4.3.1 publish_time: 2019-01-30T18:47:42.647635+0000 requires: - wgvest size: 9749736065 tags: - variants - variant effect prediction title: VEST4 type: annotator versions: - 4.0.0 - 4.0.1 - 4.0.2 - 4.0.4 - 4.0.5 - 4.0.6 - 4.0.7 - 4.0.8 - 4.0.9 - 4.1.0 - 4.1.1 - 4.1.2 - 4.2.0 - 4.3.0 - 4.3.1 vista_enhancer: code_size: 19316 commercial_warning: For commercial use, contact vtdelapuente@lbl.gov data_size: 108548 data_sources: 2019.05.09: hg19 2019.08.02: hg19 2019.2.5: hg19 2019.3.22: hg19 2019.3.4: hg19 data_versions: 2019.05.09: 2019.3.22 2019.08.02: 2019.3.22 2019.2.5: 2019.2.5 2019.3.22: 2019.3.22 2019.3.4: 2019.2.5 datasource: hg19 description: Experimentally validated enhancers from the VISTA Enhancer Browser developer: citation: "Visel, A., Minovitsky, S., Dubchak, I., & Pennacchio, L. A. 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visualization title: Cancer Gene Landscape Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.1.0 wgchasmplus: code_size: 78014 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null datasource: null description: CHASMplus webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:46:00.000000' requires: null size: 78014 tags: - visualization title: CHASMplus type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.1.0 wgcircossummary: code_size: 617309 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null 1.1.7: null 1.1.8: null data_versions: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null 1.1.7: null 1.1.8: null datasource: null description: Circos Summary result viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.8 publish_time: '2018-09-26T01:39:06.000000' requires: null size: 617309 tags: - visualization widgets title: Circos Summary type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 - 1.1.6 - 1.1.7 - 1.1.8 wgcivic: code_size: 45182 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.2: null 1.1.0: null datasource: null description: CIViC webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:46:25.000000' requires: null size: 45182 tags: - visualization title: CIViC type: webviewerwidget versions: - 1.0.0 - 1.0.2 - 1.1.0 wgcivic_gene: code_size: 45275 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.5: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.0.5: null 1.1.0: null 1.1.1: null datasource: null description: CIViC Gene webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.1 publish_time: '2018-10-26T20:46:48.000000' requires: null size: 45275 tags: - visualization title: CIViC Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.5 - 1.1.0 - 1.1.1 wgclingen: code_size: 1931 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.1.0: null 1.1.1: null datasource: null description: Base information webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.1 publish_time: 2019-10-16T03:24:22.550948+0000 requires: null size: 1931 tags: - visualization title: ClinGen type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.1.1 wgclinvar: code_size: 41117 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null 1.1.1: null datasource: null description: Clinvar webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.1 publish_time: '2019-01-08T21:10:10.000000' requires: null size: 41117 tags: - visualization title: Clinvar type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 - 1.1.1 wgclinvarsummary: code_size: 2328 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Clinvar summary webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2021-05-26T14:39:00.202821+0000 requires: null size: 2328 tags: - visualization title: ClinVar Summary type: webviewerwidget versions: - 1.0.0 wgcodingvsnoncodingsummary: code_size: 2638 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.2.0: null 2.0.0: null data_versions: 1.0.0: null 1.0.2: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.2.0: null 2.0.0: null datasource: null description: Coding vs noncoding summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 2.0.0 publish_time: '2018-09-26T01:39:16.000000' requires: null size: 2638 tags: - visualization title: Coding vs Noncoding Summary type: webviewerwidget versions: - 1.0.0 - 1.0.2 - 1.0.4 - 1.0.5 - 1.0.6 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.2.0 - 2.0.0 wgcomutations: code_size: 141519 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Co-mutations webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-24T18:40:51.040486+0000 requires: null size: 141519 tags: - visualization title: Co-Mutated Genes Across Multiple Samples type: webviewerwidget versions: - 1.0.0 wgcosmic: code_size: 15917 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.1.0: null datasource: null description: Cosmic webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:16:28.419376+0000 requires: null size: 15917 tags: - visualization title: Cosmic type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.1.0 wgcosmic_gene: code_size: 15592 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: Cosmic gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2019-01-09T15:45:32.000000' requires: null size: 15592 tags: - visualization title: Cosmic Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgdbsnp: code_size: 6923 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: dbSNP webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:48:34.000000' requires: null size: 6923 tags: - visualization title: dbSNP type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgdenovo: code_size: 5500 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.6.1: null 1.6.2: null 1.6.3: null 1.7.0: null data_versions: 1.0.0: null 1.6.1: null 1.6.2: null 1.6.3: null 1.7.0: null datasource: null description: denovo-db webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.7.0 publish_time: '2018-08-16T21:54:54.000000' requires: null size: 5500 tags: - visualization title: denovo-db type: webviewerwidget versions: - 1.0.0 - 1.6.1 - 1.6.2 - 1.6.3 - 1.7.0 wgenhancer: code_size: 48703 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: Frequently Mutated Enhancers webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-02-26T16:37:42.480776+0000 requires: null size: 48703 tags: - visualization title: Frequently Mutated Enhancers type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgensembl_regulatory_build: code_size: 1269 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Ensembl Regulatory Build webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2021-01-13T16:22:41.349629+0000 requires: null size: 1269 tags: - visualization title: Ensembl Regulatory Build type: webviewerwidget versions: - 1.0.0 wgesp6500: code_size: 16984 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: ESP6500 webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:17:28.803767+0000 requires: null size: 16984 tags: - visualization title: ESP6500 type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgess_gene: code_size: 865 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: Essential Gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2018-12-05T18:37:27.000000' requires: null size: 865 tags: - visualization title: Essential Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgexac_gene: code_size: 847 commercial_warning: null data_size: 0 data_sources: 1.1.0: null data_versions: 1.1.0: null datasource: null description: ExAC Gene widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: 2020-09-14T19:54:34.101641+0000 requires: null size: 847 tags: - visualization title: ExAC Gene type: webviewerwidget versions: - 1.1.0 wgfathmm: code_size: 2190 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: FATHMM webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2018-11-26T19:32:50.000000' requires: null size: 2190 tags: - visualization title: FATHMM type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0 wggenehancer: code_size: 1452 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: GeneHancer webviewer widget developer: citation: '' email: support@cravat.us name: OpenCRAVAT developers organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.1 publish_time: 2020-09-14T19:54:34.127769+0000 requires: null size: 1452 tags: - visualization title: GeneHancer type: webviewerwidget versions: - 1.0.0 - 1.0.1 wggerp: code_size: 694 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: GERP++ web viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-12-11T20:29:41.000000' requires: null size: 694 tags: - visualization title: GERP++ type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgghis: code_size: 541 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: GHIS webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-29T17:04:37.000000' requires: null size: 541 tags: - visualization title: GHIS type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wggnomad: code_size: 23818 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null datasource: null description: gnomAD webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.1 publish_time: '2018-10-26T20:49:59.000000' requires: null size: 23818 tags: - visualization title: gnomAD type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 wggnomad3: code_size: 23798 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: gnomAD3 webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2020-09-14T19:54:34.177886+0000 requires: null size: 23798 tags: - visualization title: gnomAD3 type: webviewerwidget versions: - 1.0.0 - 1.1.0 wggnomad_gene: code_size: 24989 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.1.0: null datasource: null description: gnomAD Gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:19:14.905227+0000 requires: null size: 24989 tags: - visualization title: gnomAD Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.1.0 wggo: code_size: 11653 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.1.0: null 1.2.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.1.0: null 1.2.0: null datasource: null description: Gene ontology webviewer widget developer: email: rkim@mail.insilico.us.com organization: In Silico Solutions groups: [] has_logo: true hidden: true latest_version: 1.2.0 publish_time: '2018-05-18T14:23:01.000000' requires: null size: 11653 tags: - visualization title: Gene ontology type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.1.0 - 1.2.0 wggosummary: code_size: 18805 commercial_warning: null data_size: 10573824 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.0.8: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.7: 1.0.0 1.0.8: 1.0.0 datasource: null description: Gene Ontology Summary webviewer widget developer: citation: '' email: support@cravat.us name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.8 publish_time: '2018-10-26T20:50:29.000000' requires: null size: 10592629 tags: - visualization widgets title: Gene Ontology Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 wggrasp: code_size: 6263 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null datasource: null description: GRASP webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:50:48.000000' requires: null size: 6263 tags: - visualization title: GRASP type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 wggtex: code_size: 13025 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null datasource: null description: GTEx webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.1 publish_time: 2019-03-11T12:00:46.498740+0000 requires: null size: 13025 tags: - visualization title: GTEx type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 wggwas_catalog: code_size: 1619 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.1.0: null 1.1.1: null datasource: null description: GWAS Catalog webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.1 publish_time: 2019-08-26T15:34:53.999669+0000 requires: null size: 1619 tags: - visualization title: GWAS Catalog type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.1.1 wghaploreg_afr: code_size: 2064 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.2.0: null data_versions: 1.0.0: null 1.1.0: null 1.2.0: null datasource: null description: Haploreg African information webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.2.0 publish_time: 2019-10-25T21:28:47.289373+0000 requires: null size: 2064 tags: - visualization title: Haploreg African type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.2.0 wghaploreg_amr: code_size: 2066 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.2.0: null data_versions: 1.0.0: null 1.1.0: null 1.2.0: null datasource: null description: Haploreg American information webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.2.0 publish_time: 2019-10-25T21:29:18.482192+0000 requires: null size: 2066 tags: - visualization title: Haploreg American type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.2.0 wghaploreg_asn: code_size: 1433 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: Haploreg Asian information webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: 2019-10-25T21:29:48.559944+0000 requires: null size: 1433 tags: - visualization title: Haploreg Asian type: webviewerwidget versions: - 1.0.0 - 1.1.0 wghaploreg_eur: code_size: 2097 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.2.0: null data_versions: 1.0.0: null 1.1.0: null 1.2.0: null datasource: null description: Haploreg European information webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.2.0 publish_time: 2019-10-25T21:30:18.994356+0000 requires: null size: 2097 tags: - visualization title: Haploreg European type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.2.0 wghaplotypes: code_size: 2280 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: Haplotype information webviewer widget developer: citation: '' email: mary.a.wood.91@gmail.com name: Mary Wood organization: OHSU website: '' groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:20:30.324476+0000 requires: null size: 2280 tags: - visualization title: Haplotype Information type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wghg19: code_size: 614 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: hg19 info webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-13T18:48:37.000000' requires: null size: 614 tags: - visualization title: hg19 info widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wghgvs: code_size: 2133 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.2.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.2.0: null datasource: null description: HGVS webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.2.0 publish_time: '2018-10-26T20:51:08.000000' requires: null size: 2133 tags: - visualization title: HGVS type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.2.0 wgigv: code_size: 2728758 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null datasource: null description: igv.js integration into Open-CRAVAT developer: citation: "James T. Robinson, Helga Thorvaldsd\xF3ttir, Wendy Winckler, Mitchell\ \ Guttman, Eric S. Lander, Gad Getz, Jill P. Mesirov. Integrative Genomics Viewer.\ \ Nature Biotechnology 29, 24\u201326 (2011)\nHelga Thorvaldsd\xF3ttir, James\ \ T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance\ \ genomics data visualization and exploration. Briefings in Bioinformatics 14,\ \ 178-192 (2013)." email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: '2018-11-13T21:20:38.000000' requires: null size: 2728758 tags: - visualization title: IGV type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 wgindel: code_size: 98328 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: Insertions and Deletions webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-03-01T15:11:48.027512+0000 requires: null size: 98328 tags: - visualization title: Insertions and Deletions type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgintact: code_size: 24126 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: IntAct webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2019-01-08T21:38:13.000000' requires: null size: 24126 tags: - visualization title: IntAct type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0 wginterpro: code_size: 129060 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 71.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 71.1.0: null datasource: null description: InterPro webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 71.1.0 publish_time: '2019-01-10T14:43:23.000000' requires: null size: 129060 tags: - visualization title: InterPro type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 71.1.0 wglinsight: code_size: 134816 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: LINSIGHT webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:51:29.000000' requires: null size: 134816 tags: - visualization title: LINSIGHT type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0 wgloftool: code_size: 779 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: LoFtool webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2018-12-11T20:29:31.000000' requires: null size: 779 tags: - visualization title: LoFtool type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wglollipop: code_size: 68773 commercial_warning: null data_size: 73099264 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null 1.1.10: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null 1.1.7: null 1.1.8: null 1.1.9: null 1.2.0: null 1.3.0: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.1.0: 1.1.0 1.1.1: 1.1.0 1.1.10: 1.1.0 1.1.2: 1.1.0 1.1.3: 1.1.0 1.1.4: 1.1.0 1.1.5: 1.1.0 1.1.6: 1.1.0 1.1.7: 1.1.0 1.1.8: 1.1.0 1.1.9: 1.1.0 1.2.0: 1.1.0 1.3.0: 1.1.0 datasource: null description: Protein diagram webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.3.0 publish_time: '2018-11-14T22:12:07.000000' requires: null size: 73168037 tags: - visualization widgets title: Protein diagram type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 - 1.1.6 - 1.1.7 - 1.1.8 - 1.1.9 - 1.1.10 - 1.2.0 - 1.3.0 wgmirbase: code_size: 1424 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: miRBase webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2021-01-13T16:22:41.326180+0000 requires: null size: 1424 tags: - visualization title: miRBase type: webviewerwidget versions: - 1.0.0 wgmitomap: code_size: 1602 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: MITOMAP webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.0 publish_time: 2021-06-24T18:40:50.866491+0000 requires: null size: 1602 tags: - visualization title: MITOMAP type: webviewerwidget versions: - 1.0.0 wgmupit: code_size: 313385 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: MuPIT webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:51:53.000000' requires: null size: 313385 tags: - visualization title: MuPIT type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgmutation_assessor: code_size: 1409 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.2.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.2.0: null datasource: null description: Mutation Assessor webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.2.0 publish_time: '2018-11-26T19:33:16.000000' requires: null size: 1409 tags: - visualization title: Mutation Assessor type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.2.0 wgmutpred1: code_size: 2021 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null datasource: null description: MutPred webviewer widget developer: citation: '' email: '' name: '' organization: '' website: '' groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2018-11-28T16:34:00.000000' requires: null size: 2021 tags: - visualization title: MutPred type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.1.0 wgncbigene: code_size: 60991 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: NCBI Gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:23:02.251057+0000 requires: null size: 60991 tags: - visualization title: NCBI Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgncrna: code_size: 50063 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: Non-coding RNA webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:53:07.000000' requires: null size: 50063 tags: - visualization title: Non-coding RNA diagram type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgndex: code_size: 841844 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.1.0: null datasource: null description: NDEx webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:53:26.000000' requires: null size: 841844 tags: - visualization title: NDEx type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.1.0 wgndexchasmplussummary: code_size: 5361055 commercial_warning: null data_size: 109242 data_sources: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.12: null 1.0.13: null 1.0.14: null 1.0.15: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.8: null 1.0.9: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.10: 1.0.0 1.0.12: 1.0.0 1.0.13: 1.0.0 1.0.14: 1.0.0 1.0.15: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.8: 1.0.0 1.0.9: 1.0.0 1.1.0: 1.0.0 1.1.1: 1.0.0 datasource: null description: NDEX Enriched Cancer Pathways widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.1 publish_time: '2018-09-26T01:40:59.000000' requires: null size: 5470297 tags: - visualization title: Cancer Pathways Enriched for CHASMplus Drivers (NDEx) type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.8 - 1.0.9 - 1.0.10 - 1.0.12 - 1.0.13 - 1.0.14 - 1.0.15 - 1.1.0 - 1.1.1 wgndexvestsummary: code_size: 5360369 commercial_warning: null data_size: 109242 data_sources: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.11: null 1.0.12: null 1.0.13: null 1.0.14: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.0.9: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 1.0.12: 1.0.0 1.0.13: 1.0.0 1.0.14: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.7: 1.0.0 1.0.9: 1.0.0 1.1.0: 1.0.0 1.1.1: 1.0.0 datasource: null description: NDEX Enriched Pathogentic Pathways widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.1 publish_time: '2018-09-26T01:41:16.000000' requires: null size: 5469611 tags: - visualization title: NDEX Enriched Pathogentic Pathways type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.9 - 1.0.10 - 1.0.11 - 1.0.12 - 1.0.13 - 1.0.14 - 1.1.0 - 1.1.1 wgnote: code_size: 4422 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null datasource: null description: Note-taking widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.4 publish_time: '2019-01-12T16:58:39.000000' requires: null size: 4422 tags: - notes title: Note type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wgomim: code_size: 1107 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: OMIM webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2020-09-14T19:57:52.332038+0000 requires: null size: 1107 tags: - visualization title: OMIM type: webviewerwidget versions: - 1.0.0 wgpharmgkb: code_size: 1540 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: PharmGKB webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: 2019-09-30T19:48:42.874848+0000 requires: null size: 1540 tags: - visualization title: PharmGKB type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgphastcons: code_size: 1071 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: phastCons web viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2018-11-26T19:53:49.000000' requires: null size: 1071 tags: - visualization title: Phast Cons type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0 wgphdsnpg: code_size: 7868 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: PhDSNPg developer: citation: '' email: support@cravat.us name: Kyle Moad organization: In Silico Solutions website: '' groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:53:55.000000' requires: null size: 7868 tags: - visualization title: PhDSNPg type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0 wgphi: code_size: 601 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: P(HI) webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2019-01-08T21:39:02.000000' requires: null size: 601 tags: - visualization title: P(HI) type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgphylop: code_size: 1027 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: PhyloP webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2019-01-03T20:32:39.000000' requires: null size: 1027 tags: - visualization title: PhyloP type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0 wgprec: code_size: 807 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: P(rec) webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2019-01-08T21:39:35.000000' requires: null size: 807 tags: - visualization title: P(rec) type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgpseudogene: code_size: 13006 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: Pseudogene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:54:52.000000' requires: null size: 13006 tags: - visualization title: Pseudogene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgpubmed: code_size: 29575 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: PubMed webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:25:18.796147+0000 requires: null size: 29575 tags: - visualization title: PubMed type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgrevel: code_size: 34087 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: REVEL webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-26T20:55:49.000000' requires: null size: 34087 tags: - visualization title: REVEL type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgrvis: code_size: 1115 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: RVIS webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2019-01-09T16:07:12.000000' requires: null size: 1115 tags: - visualization title: RVIS type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgsiphy: code_size: 1523 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.1.0: null 1.1.1: null datasource: null description: SiPhy webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.1 publish_time: 2019-05-06T20:26:19.430462+0000 requires: null size: 1523 tags: - visualization title: SiPhy type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.1.0 - 1.1.1 wgsosamplesummary: code_size: 11546 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null 1.1.7: null 1.1.8: null 1.2.1: null 1.2.2: null 1.2.3: null 1.3.0: null data_versions: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null 1.1.7: null 1.1.8: null 1.2.1: null 1.2.2: null 1.2.3: null 1.3.0: null datasource: null description: Sequence Ontology Sample Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.3.0 publish_time: '2018-09-26T01:41:46.000000' requires: null size: 11546 tags: - visualization widgets title: Sequence Ontology Sample Summary type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 - 1.1.6 - 1.1.7 - 1.1.8 - 1.2.1 - 1.2.2 - 1.2.3 - 1.3.0 wgsosummary: code_size: 4356 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.2: null 1.1.3: null 1.2.0: null 1.2.1: null 1.3.0: null 1.4.0: null 1.5.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.2: null 1.1.3: null 1.2.0: null 1.2.1: null 1.3.0: null 1.4.0: null 1.5.0: null datasource: null description: Sequence Ontology Summary result viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.5.0 publish_time: '2018-09-26T01:41:51.000000' requires: null size: 4356 tags: - visualization title: Sequence Ontology Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.2 - 1.1.3 - 1.2.0 - 1.2.1 - 1.3.0 - 1.4.0 - 1.5.0 wgswissprot_ptm: code_size: 1174 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Swiss-Prot PTM webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2020-09-15T22:10:23.410746+0000 requires: null size: 1174 tags: - visualization widgets title: Swiss-Prot PTM type: webviewerwidget versions: - 1.0.0 wgtarget: code_size: 63541 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: Target webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:27:05.179368+0000 requires: null size: 63541 tags: - visualization title: Target type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgthousandgenomes: code_size: 24174 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:27:21.302904+0000 requires: null size: 24174 tags: - visualization title: 1000 Genomes type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgthousandgenomes_ad_mixed_american: code_size: 1357 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.175610+0000 requires: null size: 1357 tags: - visualization title: 1000 Genomes-Ad Mixed American type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_african: code_size: 1621 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.186767+0000 requires: null size: 1621 tags: - visualization title: 1000 Genomes-African type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_east_asian: code_size: 1410 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.196641+0000 requires: null size: 1410 tags: - visualization title: 1000 Genomes-East Asian type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_european: code_size: 1392 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.207269+0000 requires: null size: 1392 tags: - visualization title: 1000 Genomes-European type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_south_asian: code_size: 1419 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.217555+0000 requires: null size: 1419 tags: - visualization title: 1000 Genomes-South Asian type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgtopgeneschasmplussummary: code_size: 3087 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null datasource: null description: Top Genes CHSAMplus Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2018-10-16T18:07:44.000000' requires: null size: 3087 tags: - visualization title: Top Genes CHASMplus Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 wgtopgenessummary: code_size: 4605 commercial_warning: null data_size: 619520 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.2.0: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.2.0: 1.0.0 datasource: null description: Top Genes Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.2.0 publish_time: '2018-09-26T01:42:15.000000' requires: null size: 624125 tags: - visualization widgets title: Genes Ranked by Total Variants type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.2.0 wgtopgenesvestsummary: code_size: 3056 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null datasource: null description: Top Genes VEST Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: '2018-10-16T18:07:59.000000' requires: null size: 3056 tags: - visualization title: Top Genes VEST Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 wguk10k_cohort: code_size: 52341 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.1.0: null 1.1.1: null datasource: null description: UK10K Cohort webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.1 publish_time: 2019-05-06T20:27:52.817920+0000 requires: null size: 52341 tags: - visualization title: UK10K Cohort type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.1.0 - 1.1.1 wgvcfinfo: code_size: 910 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: VCF info webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-13T18:45:14.000000' requires: null size: 910 tags: - visualization title: VCF info widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgvest: code_size: 162921 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.1.0: null datasource: null description: VEST webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: '2018-10-29T20:25:54.000000' requires: null size: 162921 tags: - visualization title: VEST type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.1.0