23andme-converter: code_size: 50482 commercial_warning: null data_size: 6014561977 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: 1.0.2 1.0.4: 1.0.2 datasource: null description: File converter for 23andMe format developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.4 publish_time: 2019-05-22T19:12:35.744619+0000 requires: null size: 6014612459 tags: - converters title: 23andMe Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.4 abraom: code_size: 10969 commercial_warning: 'For academic use only. ' data_size: 113610752 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Exomic allele frequencies of an elderly cohort of Brazilians in the ABraOM database developer: citation: "Naslavsky, Yamamoto et al. (2017). Exomic variants of an elderly cohort\ \ of Brazilians in the ABraOM database. Human Mutation, 38(7), 751\xE2\u20AC\ \u201C763." email: '' name: Naslavsky, Yamamoto et al. organization: NCBI Hackathon 2019 website: http://abraom.ib.usp.br/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T18:27:35.853157+0000 requires: null size: 113621721 tags: - allele frequency title: ABRaOM type: annotator versions: - 1.0.0 aggregator: code_size: 32464 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.2: null data_versions: 1.0.0: null 1.0.2: null datasource: null description: Aggregator developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.2 publish_time: '2018-11-20T22:16:49.000000' requires: null size: 32464 tags: null title: Aggregator type: aggregator versions: - 1.0.0 - 1.0.2 alfa: code_size: 120291 commercial_warning: null data_size: 19821930500 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:35:24.767374+0000 requires: - alfa_group size: 19822050791 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator' type: annotator versions: - 1.0.0 alfa_african: code_size: 121829 commercial_warning: null data_size: 23177492484 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:36:36.943153+0000 requires: - alfa_group size: 23177614313 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator African' type: annotator versions: - 1.0.0 alfa_asian: code_size: 122452 commercial_warning: null data_size: 24120875012 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:38:53.151457+0000 requires: - alfa_group size: 24120997464 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator Asian' type: annotator versions: - 1.0.0 alfa_european: code_size: 120349 commercial_warning: null data_size: 19817850884 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:40:14.130274+0000 requires: - alfa_group size: 19817971233 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator European' type: annotator versions: - 1.0.0 alfa_latin_american: code_size: 123448 commercial_warning: null data_size: 20335691780 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:41:58.454801+0000 requires: - alfa_group size: 20335815228 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator Latin American' type: annotator versions: - 1.0.0 alfa_other: code_size: 120329 commercial_warning: null data_size: 18854877188 data_sources: 1.0.0: 2020.02.29 data_versions: 1.0.0: 1.0.0 datasource: 2020.02.29 description: The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases. developer: citation: 'L. Phan, Y. Jin, H. Zhang, W. Qiang, E. Shekhtman, D. Shao, D. Revoe, R. Villamarin, E. Ivanchenko, M. Kimura, Z. Y. Wang, L. Hao, N. Sharopova, M. Bihan, A. Sturcke, M. Lee, N. Popova, W. Wu, C. Bastiani, M. Ward, J. B. Holmes, V. Lyoshin, K. Kaur, E. Moyer, M. Feolo, and B. L. Kattman. "ALFA: Allele Frequency Aggregator." National Center for Biotechnology Information, U.S. National Library of Medicine, 10 Mar. 2020, www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/#background groups: - alfa_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-01-12T19:43:40.045906+0000 requires: - alfa_group size: 18854997517 tags: - allele frequency title: 'ALFA: Allele Frequency Aggregator Others' type: annotator versions: - 1.0.0 alphamissense: code_size: 4391 commercial_warning: null data_size: 3992842240 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Variant pathogenicity scores from AlphaMissense developer: citation: 'J. Cheng et al., Science 381, eadg7492 (2023). DOI: 10.1126/science.adg7492' email: support@opencravat.org name: Jun Cheng et al. organization: Google DeepMind website: '' groups: [] has_logo: false hidden: false latest_version: 1.0.0 publish_time: 2024-02-16T20:52:16.543127+0000 requires: null size: 3992846631 tags: - variant effect prediction - variants title: AlphaMissense type: annotator versions: - 1.0.0 ancestrydna-converter: code_size: 50856 commercial_warning: null data_size: 6014561977 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: 1.0.2 1.0.3: 1.0.2 1.0.4: 1.0.2 datasource: null description: File converter for AncestryDNA format developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.4 publish_time: 2019-05-22T19:12:52.009274+0000 requires: null size: 6014612833 tags: - converters title: AncestryDNA Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 arrvars: code_size: 129235 commercial_warning: null data_size: 2000900 data_sources: 1.0.0: January 2020 1.1.0: January 2020 1.2.0: January 2020 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 1.2.0: 1.2.0 datasource: January 2020 description: Examines variants associated with arrhythmia diseases such as Brugada Syndrome and Long QT Syndrome. developer: citation: 'Kroncke, Brett M., et al. "A Bayesian method to estimate variant-induced disease penetrance." PLoS genetics 16.6 (2020): e1008862.' email: support@cravat.us name: Vanderbilt University Medical Center for Arrhythmia Research and Therapeutics organization: Vanderbilt University Medical Center for Arrhythmia Research and Therapeutics website: https://oates.app.vumc.org/vancart/ groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-17T20:17:22.944577+0000 requires: null size: 2130135 tags: - clinical relevance - variant effect prediction - variants title: Arrhythmia Channelopathy Variants type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 biogrid: code_size: 87060 commercial_warning: null data_size: 17891328 data_sources: 3.5.167: 4.0.0 3.5.168: v3.5.167 3.5.169: v3.5.167 3.5.170: v3.5.167 3.5.171: v3.5.167 3.5.172: v3.5.167 data_versions: 3.5.167: 3.5.167 3.5.168: 3.5.167 3.5.169: 3.5.167 3.5.170: 3.5.167 3.5.171: 3.5.167 3.5.172: 3.5.167 datasource: v3.5.167 description: Comprehensive interaction repository developer: citation: 'Oughtred R, Stark C, Breitkreutz BJ, et al. (2018). The BioGRID interaction database: 2019 update. Nucleic Acids Res. 47(D1):D529-D541.' email: support@cravat.us name: BioGRID organization: BioGRID website: https://thebiogrid.org/ groups: [] has_logo: true hidden: false latest_version: 3.5.172 publish_time: 2019-01-30T18:34:54.833895+0000 requires: - wgbiogrid size: 17978388 tags: - genes - interactions - dbnsfp title: BioGRID type: annotator versions: - 3.5.167 - 3.5.168 - 3.5.169 - 3.5.170 - 3.5.171 - 3.5.172 brca1_func_assay: code_size: 130755 commercial_warning: 'For commercial use, contact lstarita@uw.edu. ' data_size: 137390 data_sources: 2018.10.4: null 2018.12.20: null 2018.12.26: null 2019.03.20: dbNSFP v4.0b1 2019.03.21: 2018.04.05 2019.05.13: 2018.04.05 2019.1.23: null 2019.1.231: dbNSFP v4.0b1 2019.2.6: dbNSFP v4.0b1 data_versions: 2018.10.4: 2018.10.4 2018.12.20: 2018.10.4 2018.12.26: 2018.10.4 2019.03.20: 2018.10.4 2019.03.21: 2018.10.4 2019.05.13: 2018.10.4 2019.1.23: 2018.10.4 2019.1.231: 2018.10.4 2019.2.6: 2018.10.4 datasource: 2018.04.05 description: Impact of BRCA1 missense variants on protein function as determined by multiplex homology-directed DNA repair assay developer: citation: Findlay, G.M., Daza, R.M., Martin, B., Zhang, M.D., Leith, A.P., Gasperini, M.J., Janizek, J.D., Huang, X., Starita, L.M., & Shendure, J. (2018). Accurate classification of BRCA1 variants with saturation genome editing. Nature, 1-6. email: support@cravat.us name: Lea Starita organization: Starita Lab website: http://staritalab.org/ groups: [] has_logo: true hidden: false latest_version: 2019.05.13 publish_time: 2019-03-23T20:11:20.673046+0000 requires: - wgbrca1_func_assay size: 268145 tags: - variants - cancer - functional studies title: BRCA1 Saturation Genome Editing Scores type: annotator versions: - 2018.10.4 - 2018.12.20 - 2018.12.26 - 2019.1.23 - 2019.1.231 - 2019.2.6 - 2019.03.20 - 2019.03.21 - 2019.05.13 cadd: code_size: 128977 commercial_warning: CADD scores are freely available for all non-commercial applications.If you are planning on using them in a commercial application, please obtain a license. data_size: 86595748694 data_sources: 1.0.0: v1.6 data_versions: 1.0.0: 1.0.0 datasource: v1.6 description: CADD is a tool for scoring the deleteriousness of single nucleotide variants in the human genome. developer: citation: 'Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M. CADD: predicting the deleteriousness of variants throughout the human genome. Nucleic Acids Res.2018 Oct 29. doi: 10.1093/nar/gky1016. PubMed PMID: 30371827.' email: support@cravat.us name: Martin Kircher organization: Shendure Lab, University of Washington website: https://cadd.gs.washington.edu/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-14T15:18:12.657184+0000 requires: - pytabix size: 86595877671 tags: - variant effect prediction title: CADD type: annotator versions: - 1.0.0 cadd_exome: code_size: 254807 commercial_warning: CADD scores are freely available for all non-commercial applications. If you are planning on using them in a commercial application, please obtain a license. data_size: 6811920384 data_sources: 1.6.0: '1.6' 1.6.1: '1.6' data_versions: 1.6.0: 1.6.0 1.6.1: 1.6.0 datasource: '1.6' description: CADD is a tool for scoring the deleteriousness of single nucleotide variants in the human genome. developer: citation: 'Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M. CADD: predicting the deleteriousness of variants throughout the human genome. Nucleic Acids Res. 2018 Oct 29. doi: 10.1093/nar/gky1016. PubMed PMID: 30371827.' email: support@cravat.us name: Martin Kircher organization: Shendure Lab, University of Washington website: https://cadd.gs.washington.edu/ groups: [] has_logo: true hidden: false latest_version: 1.6.1 publish_time: 2020-05-18T16:24:17.165379+0000 requires: null size: 6812175191 tags: - variant effect prediction - variants title: CADD Exome type: annotator versions: - 1.6.0 - 1.6.1 cancer_genome_interpreter: code_size: 347878 commercial_warning: Freely available for non-commercial use. data_size: 198660 data_sources: 1.0.0: 2018.01.17 1.1.0: 2018.01.17 1.2.0: 2018.01.17 1.3.0: 2018.01.17 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 1.2.0: 1.2.0 1.3.0: 1.3.0 datasource: 2018.01.17 description: Flags validated oncogenic alterations and genomic biomarkers of drug response, while predicting cancer drivers among mutations of unknown significance. developer: citation: 'Tamborero, David, et al. "Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations." Genome medicine 10.1 (2018): 25.' email: support@cravat.us name: Global Alliance for Genomics and Health organization: Global Alliance for Genomics and Health website: https://www.cancergenomeinterpreter.org/biomarkers groups: [] has_logo: true hidden: false latest_version: 1.3.0 publish_time: 2020-11-10T20:38:36.004553+0000 requires: - wgcancer_genome_interpreter size: 546538 tags: - cancer - clinical relevance - genes - variant effect prediction title: Cancer Genome Interpreter type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 - 1.3.0 cancer_hotspots: code_size: 43384 commercial_warning: null data_size: 223236 data_sources: 1.0.0: December 2017 1.1.0: December 2017 1.2.0: December 2017 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 1.2.0: 1.2.0 datasource: December 2017 description: A resource for statistically significant mutations in cancer. developer: citation: Chang et al., Accelerating discovery of functional mutant alleles in cancer. Cancer Discovery, 10.1158/2159-8290.CD-17-0321 (2017). email: support@cravat.us name: Memorial Sloan Kettering Cancer Center organization: Memorial Sloan Kettering Cancer Center website: https://www.cancerhotspots.org/ groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-08-17T15:24:05.845210+0000 requires: - wgcancer_hotspots size: 266620 tags: null title: Cancer Hotspots type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 cardioboost: code_size: 33206 commercial_warning: null data_size: 18155524 data_sources: 1.0.0: v2.1 data_versions: 1.0.0: 1.0.0 datasource: v2.1 description: Predicts pathogenicity of missense variants for inherited cardiac conditions developer: citation: Zhang, Xiaolei, et al. "Disease-specific variant pathogenicity prediction significantly improves variant interpretation in inherited cardiac conditions." bioRxiv (2020). email: support@cravat.us name: CardioBoost organization: CardioBoost website: https://www.cardiodb.org/cardioboost/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:51:14.878648+0000 requires: null size: 18188730 tags: - clinical relevance - variant effect prediction - variants title: CardioBoost type: annotator versions: - 1.0.0 ccr: code_size: 73165 commercial_warning: null data_size: 7923716 data_sources: 1.0.0: December 2018 data_versions: 1.0.0: 1.0.0 datasource: December 2018 description: The constrained coding regions model (CCR) uses the Genome Aggregation Database to reveal regions of protein coding genes that are likely to be under potentially purifiying selection. developer: citation: Havrilla, J.M., Pedersen, B.S., Layer, R.M. & Quinlan, A.R. A map of constrained coding regions in the human genome. Nature Genetics (2018). doi:10.1038/s41588-018-0294-6 email: support@cravat.us name: James M. Havrilla organization: University of Utah website: https://s3.us-east-2.amazonaws.com/ccrs/ccr.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:51:14.916179+0000 requires: null size: 7996881 tags: - genes title: 'CCR: Constrained Coding Regions' type: annotator versions: - 1.0.0 ccre_screen: code_size: 278039 commercial_warning: null data_size: 77563908 data_sources: 1.0.0: 2019.1 1.0.1: 2019.1 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: 2019.1 description: SCREEN allows the user to explore Candidate cis-Regulatory Elements (cCREs) and investigate how these elements relate to other Encyclopedia annotations and raw ENCODE data. developer: citation: "ENCODE Project Consortium, Jill E. Moore, Michael J. Purcaro, Henry\ \ E. Pratt, Charles B. Epstein, Noam Shoresh, Jessika Adrian, et al. 2020. \u201C\ Expanded Encyclopaedias of DNA Elements in the Human and Mouse Genomes.\u201D\ \ Nature 583 (7818): 699\u2013710." email: support@cravat.us name: Weng Lab organization: UMass Med, ENCODE Data Analysis Center website: https://screen.wenglab.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-10-15T19:40:16.488986+0000 requires: - wgccre_screen size: 77841947 tags: - non coding title: Candidate cis-Regulatory Elements by ENCODE (SCREEN) type: annotator versions: - 1.0.0 - 1.0.1 cedar: code_size: 57397 commercial_warning: null data_size: 8634239 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Annotations from the Cancer Epitope Database developer: citation: "Ko\u015Falo\u011Flu-Yal\xE7\u0131n Z, Blazeska N, Vita R, Carter H,\ \ Nielsen M, Schoenberger S, Sette A, Peters B. The Cancer Epitope Database\ \ and Analysis Resource (CEDAR). Nucleic Acids Res. 2023 Jan 6;51(D1):D845-D852.\ \ doi: 10.1093/nar/gkac902. PMID: 36250634; PMCID: PMC9825495" email: support@opencravat.org name: CEDAR Team organization: IEDB website: cedar.iedb.org groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2024-02-29T22:46:27.393580+0000 requires: null size: 8691636 tags: - variants - cancer title: CEDAR type: annotator versions: - 1.0.0 cgc: code_size: 153785 commercial_warning: For commercial use, contact cosmic@sanger.ac.uk data_size: 73728 data_sources: 85.0.0: v85 85.0.1: v85 85.0.10: '2019-03-23' 85.0.11: '2019-03-23' 85.0.12: '2019-03-23' 85.0.3: v85 85.0.5: v85 85.0.6: v85 85.0.7: v85 85.0.8: v85 85.0.9: v85 data_versions: 85.0.0: 85.0.0 85.0.1: 85.0.0 85.0.10: 85.0.10 85.0.11: 85.0.10 85.0.12: 85.0.10 85.0.3: 85.0.3 85.0.5: 85.0.3 85.0.6: 85.0.3 85.0.7: 85.0.3 85.0.8: 85.0.3 85.0.9: 85.0.3 datasource: '2019-03-23' description: Cancer Gene Census annotation developer: citation: Futreal, P.A., Coin, L.J., Marshall, M., Down, T., Hubbard, T.L., Wooster, R., Rahman, N., & Stratton, M.R. (2004). A census of human cancer genes. Nature Reviews Cancer, 4, 177-183. email: support@cravat.us name: Sanger Institute organization: Sanger Institute website: https://cancer.sanger.ac.uk/census groups: [] has_logo: true hidden: false latest_version: 85.0.12 publish_time: 2019-03-23T17:50:47.555923+0000 requires: - wgcgc size: 227513 tags: - genes - cancer title: Cancer Gene Census type: annotator versions: - 85.0.0 - 85.0.1 - 85.0.3 - 85.0.5 - 85.0.6 - 85.0.7 - 85.0.8 - 85.0.9 - 85.0.10 - 85.0.11 - 85.0.12 cgd: code_size: 97642 commercial_warning: null data_size: 612356 data_sources: 1.0.0: 2021.02.09 1.0.1: 2021.02.09 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: 2021.02.09 description: A manually curated database of conditions with known genetic causes, focusing on medically significant genetic data with available interventions. developer: citation: Solomon BD, Nguyen AD, Bear KA, Wolfsberg TG. Clinical Genomic Database. Proc Natl Acad Sci U S A. 2013 May 21. [Epub ahead of print] [PubMed]. email: support@cravat.us name: NIH organization: NIH website: https://research.nhgri.nih.gov/CGD/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-06-10T18:21:10.186851+0000 requires: - wgcgd size: 709998 tags: - clinical relevance - genes title: 'CGD: Clinical Genomic Database' type: annotator versions: - 1.0.0 - 1.0.1 cgl: code_size: 454090 commercial_warning: null data_size: 8192 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: v2013.03.29 1.0.4: v2013.03.29 1.0.5: v2013.03.29 1.0.6: v2013.03.29 1.0.7: v2013.03.29 1.0.8: v2013.03.29 1.0.9: v2013.03.29 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.7: 1.0.7 1.0.8: 1.0.7 1.0.9: 1.0.7 datasource: v2013.03.29 description: Oncogenes and tumor supressor genes from Vogelstein et al. 2013 developer: citation: Vogelstein, B., Papadopoulos, N., Velculescu, V.E., Zhou, S., Diaz, L.A., & Kinzler, K.W. (2013). Cancer genome landscapes. Science, 339 6127, 1546-58. email: support@cravat.us name: Bert Vogelstein organization: Johns Hopkins University website: http://science.sciencemag.org/content/339/6127/1546 groups: [] has_logo: true hidden: false latest_version: 1.0.9 publish_time: 2019-01-30T18:35:22.551632+0000 requires: null size: 462282 tags: - genes - cancer title: Cancer Gene Landscape type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.9 chasmplus: code_size: 878854 commercial_warning: null data_size: 8040433475 data_sources: 1.0.1: null 1.0.10: v1.0.0 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: v1.0.0 1.0.6: v1.0.0 1.0.7: v1.0.0 1.0.8: v1.0.0 1.0.9: v1.0.0 data_versions: 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.2: 1.0.1 1.0.3: 1.0.1 1.0.4: 1.0.1 1.0.5: 1.0.1 1.0.6: 1.0.1 1.0.7: 1.0.1 1.0.8: 1.0.1 1.0.9: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: Tokheim, C., Karchin, R. (2018). CHASMplus reveals the scope of somatic missense mutations driving human cancers. bioRxiv, 313296. email: ctokhei1@alumni.jh.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.10 publish_time: 2019-01-30T18:35:31.269709+0000 requires: - wgndexchasmplussummary - wgchasmplus size: 8041312329 tags: - variants - cancer - variant effect prediction title: CHASMplus type: annotator versions: - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.9 - 1.0.10 chasmplus_ACC: code_size: 802576 commercial_warning: null data_size: 8037283752 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:21:24.414464+0000 requires: null size: 8038086328 tags: null title: CHASMplus ACC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_BLCA: code_size: 799669 commercial_warning: null data_size: 8037357449 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:21:42.309414+0000 requires: null size: 8038157118 tags: null title: CHASMplus BLCA type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_BRCA: code_size: 800041 commercial_warning: null data_size: 8037136915 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:21:59.511102+0000 requires: null size: 8037936956 tags: null title: CHASMplus BRCA type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_CESC: code_size: 800524 commercial_warning: null data_size: 8037053864 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:22:16.689409+0000 requires: null size: 8037854388 tags: null title: CHASMplus CESC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_CHOL: code_size: 799396 commercial_warning: null data_size: 8037808854 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:22:33.864305+0000 requires: null size: 8038608250 tags: null title: CHASMplus CHOL type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_COAD: code_size: 20894 commercial_warning: null data_size: 8036642141 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on COAD tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:22:51.319119+0000 requires: null size: 8036663035 tags: null title: CHASMplus COAD type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_DLBC: code_size: 800102 commercial_warning: null data_size: 8037176419 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:23:09.674093+0000 requires: null size: 8037976521 tags: null title: CHASMplus DLBC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_ESCA: code_size: 17254 commercial_warning: null data_size: 8037437057 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on ESCA tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:23:26.881833+0000 requires: null size: 8037454311 tags: null title: CHASMplus ESCA type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_GBM: code_size: 20201 commercial_warning: null data_size: 8036240284 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on GBM tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:23:44.080965+0000 requires: null size: 8036260485 tags: null title: CHASMplus GBM type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_HNSC: code_size: 21476 commercial_warning: null data_size: 8035834500 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on HNSC tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:24:01.748559+0000 requires: null size: 8035855976 tags: null title: CHASMplus HNSC type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_KICH: code_size: 801458 commercial_warning: null data_size: 8037696338 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:24:18.962661+0000 requires: null size: 8038497796 tags: null title: CHASMplus KICH type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_KIRC: code_size: 801865 commercial_warning: null data_size: 8036923777 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:28:30.820328+0000 requires: null size: 8037725642 tags: null title: CHASMplus KIRC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_KIRP: code_size: 801926 commercial_warning: null data_size: 8037201556 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:24:36.235317+0000 requires: null size: 8038003482 tags: null title: CHASMplus KIRP type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_LAML: code_size: 22163 commercial_warning: null data_size: 8037264659 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on LAML tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:24:53.891396+0000 requires: null size: 8037286822 tags: null title: CHASMplus LAML type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_LGG: code_size: 801646 commercial_warning: null data_size: 8036810614 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:25:11.448773+0000 requires: null size: 8037612260 tags: null title: CHASMplus LGG type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_LIHC: code_size: 800509 commercial_warning: null data_size: 8036551421 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:28:48.594286+0000 requires: null size: 8037351930 tags: null title: CHASMplus LIHC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_LUAD: code_size: 19796 commercial_warning: null data_size: 8036329847 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on LUAD tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:29:05.627192+0000 requires: null size: 8036349643 tags: null title: CHASMplus LUAD type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_LUSC: code_size: 19961 commercial_warning: null data_size: 8036621615 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on LUSC tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:29:22.870408+0000 requires: null size: 8036641576 tags: null title: CHASMplus LUSC type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_MESO: code_size: 23400 commercial_warning: null data_size: 8037316310 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on MESO tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:29:39.953342+0000 requires: null size: 8037339710 tags: null title: CHASMplus MESO type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_OV: code_size: 800155 commercial_warning: null data_size: 8037071744 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:29:57.575185+0000 requires: null size: 8037871899 tags: null title: CHASMplus OV type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_PAAD: code_size: 801251 commercial_warning: null data_size: 8037643421 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:30:14.724908+0000 requires: null size: 8038444672 tags: null title: CHASMplus PAAD type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_PCPG: code_size: 20226 commercial_warning: null data_size: 8037188164 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on PCPG tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:30:48.951257+0000 requires: null size: 8037208390 tags: null title: CHASMplus PCPG type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_PRAD: code_size: 800670 commercial_warning: null data_size: 8036811406 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:31:06.661266+0000 requires: null size: 8037612076 tags: null title: CHASMplus PRAD type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_READ: code_size: 802347 commercial_warning: null data_size: 8036909675 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:31:23.976942+0000 requires: null size: 8037712022 tags: null title: CHASMplus READ type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_SARC: code_size: 804489 commercial_warning: null data_size: 8036919336 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:31:41.144509+0000 requires: null size: 8037723825 tags: null title: CHASMplus SARC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_SKCM: code_size: 805775 commercial_warning: null data_size: 8036679474 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:31:58.714812+0000 requires: null size: 8037485249 tags: null title: CHASMplus SKCM type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_STAD: code_size: 17276 commercial_warning: null data_size: 8036195924 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on STAD tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:32:16.266425+0000 requires: null size: 8036213200 tags: null title: CHASMplus STAD type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_TGCT: code_size: 19233 commercial_warning: null data_size: 8037056966 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on TGCT tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:32:33.420940+0000 requires: null size: 8037076199 tags: null title: CHASMplus TGCT type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_THCA: code_size: 19699 commercial_warning: null data_size: 8036843336 data_sources: 1.0.0: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.10: 1.0.0 1.0.11: 1.0.0 datasource: v1.0.0 description: Machine learning method that predicts the functional significance of somatic missense mutations on THCA tissue developer: citation: '' email: '' name: '' organization: '' website: '' groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:32:50.659466+0000 requires: null size: 8036863035 tags: null title: CHASMplus THCA type: annotator versions: - 1.0.0 - 1.0.10 - 1.0.11 chasmplus_THYM: code_size: 800623 commercial_warning: null data_size: 8037518076 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:33:07.928708+0000 requires: null size: 8038318699 tags: null title: CHASMplus THYM type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_UCEC: code_size: 800061 commercial_warning: null data_size: 8036360279 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:33:25.575306+0000 requires: null size: 8037160340 tags: null title: CHASMplus UCEC type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_UCS: code_size: 799738 commercial_warning: null data_size: 8037627059 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:33:42.780251+0000 requires: null size: 8038426797 tags: null title: CHASMplus UCS type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 chasmplus_UVM: code_size: 798799 commercial_warning: null data_size: 8037366925 data_sources: 1.0.0: null 1.0.1: null 1.0.10: v1.0.0 1.0.11: v1.0.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.1 1.0.10: 1.0.1 1.0.11: 1.0.1 datasource: v1.0.0 description: CHASMplus is a machine learning algorithm that discriminates somatic missense mutations as either cancer drivers or passengers. Predictions can be done in either a cancer type-specific manner or by a model considering multiple cancer types together (a useful default). Along with scoring each mutation, CHASMplus has a rigorous statistical model to evaluate the statistical significance of predictions. This OpenCRAVAT module represents the v1.0 precompute of CHASMplus (source code v1.0). developer: citation: https://www.biorxiv.org/content/early/2018/06/20/313296 email: ctokheim@jhu.edu name: Collin Tokheim organization: Johns Hopkins University - Karchin Lab website: http://chasmplus.readthedocs.io/en/latest/ groups: - chasmplus_group has_logo: true hidden: false latest_version: 1.0.11 publish_time: 2019-05-31T03:34:00.072936+0000 requires: null size: 8038165724 tags: null title: CHASMplus UVM type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.10 - 1.0.11 civic: code_size: 52768 commercial_warning: null data_size: 0 data_sources: 0.0.1: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: Jan 2019 1.0.5: Jan 2019 data_versions: 0.0.1: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null datasource: Jan 2019 description: Provides descriptions and linkouts to CIViC developer: citation: Griffith, M., Spies, N.C., Krysiak, K., et al. (2017). CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics, 49(2):170-174. email: support@cravat.us name: The McDonnell Genome Institute at Washington University School of Medicine organization: The McDonnell Genome Institute at Washington University School of Medicine website: https://civicdb.org groups: [] has_logo: true hidden: false latest_version: 1.0.5 publish_time: 2019-01-30T18:35:41.089779+0000 requires: null size: 52768 tags: - variants - clinical relevance - cancer - literature title: CIViC type: annotator versions: - 0.0.1 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 civic_gene: code_size: 49854 commercial_warning: null data_size: 0 data_sources: 0.0.1: null 0.0.2: null 0.0.3: null 0.0.4: Jan 2019 0.0.5: Jan 2019 data_versions: 0.0.1: null 0.0.2: null 0.0.3: null 0.0.4: null 0.0.5: null datasource: Jan 2019 description: Provides descriptions and linkouts to CIViC developer: citation: https://www.nature.com/articles/ng.3774 email: support@cravat.us name: The McDonnell Genome Institute at Washington University School of Medicine organization: The McDonnell Genome Institute at Washington University School of Medicine website: https://civicdb.org groups: [] has_logo: true hidden: false latest_version: 0.0.5 publish_time: 2019-01-30T18:35:50.003914+0000 requires: null size: 49854 tags: - genes - clinical relevance - cancer - literature title: CIViC Gene type: annotator versions: - 0.0.1 - 0.0.2 - 0.0.3 - 0.0.4 - 0.0.5 clingen: code_size: 15019 commercial_warning: null data_size: 173825 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: null description: ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to building a central resource that defines the clinical relevance of genes and variants for use in precision medicine and research. developer: citation: 'Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R, Seifert BA, Sneddon TP, Wright MW, Milko LV, Cherry JM, Giovanni MA, Murray MF, O''Daniel JM, Ramos EM, Santani AB, Scott AF, Plon SE, Rehm HL, Martin CL, Berg JS. Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource. Am J Hum Genet. 2017 Jun 1;100(6):895-906. doi: 10.1016/j.ajhg.2017.04.015. Epub 2017 May 25. PubMed PMID: 28552198; PubMed Central PMCID: PMC5473734.' email: clingen@clinicalgenome.org name: Katrina Goddard organization: National Institutes of Health website: https://clinicalgenome.org groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-08-21T18:36:56.505747+0000 requires: - wgclingen size: 188844 tags: - genes - clinical relevance title: ClinGen Gene type: annotator versions: - 1.0.0 - 1.0.1 clinpred: code_size: 135695 commercial_warning: null data_size: 3788716036 data_sources: 1.0.0: October 2018 data_versions: 1.0.0: 1.0.0 datasource: October 2018 description: Prediction tool to identify disease-relevant nonsynonymous single nucleotide variants. developer: citation: "Alirezaie N, Kernohan KD, Hartley T, Majewski J, Hocking TD. \u201C\ ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide\ \ Variants.\u201D American Journal of Human 2018 Oct 4;103(4):474-483. PMID:30220433" email: support@cravat.us name: Najmeh Alirezaie and Jacek Majewski organization: McGill University website: https://sites.google.com/site/clinpred/home groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-03-03T18:47:32.430896+0000 requires: null size: 3788851731 tags: - variants - variant effect prediction - clinical relevance title: ClinPred type: annotator versions: - 1.0.0 clinvar: code_size: 298945 commercial_warning: null data_size: 89448448 data_sources: 2018.04.06: 2018.04.06 2018.04.061: 2018.04.06 2018.04.062: 2018.04.06 2019.01.021: 2019.01.02 2019.01.022: 2019.01.02 2019.01.024: 2019.01.02 2019.01.025: 2019.01.02 2019.02.006: 2019.01.02 data_versions: 2018.04.06: 2018.04.06 2018.04.061: 2018.04.061 2018.04.062: 2018.04.061 2019.01.021: 2018.04.061 2019.01.022: 2019.01.022 2019.01.024: 2019.01.022 2019.01.025: 2019.01.022 2019.02.006: 2019.01.022 datasource: 2019.01.02 description: ClinVar is an archive of reports of the relationships among human variations and phenotypes, with supporting evidence. developer: citation: 'Landrum, M.J., Lee, J.M., Benson, M., et al. (2016). ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Research, 44(D1):D862-8.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/clinvar/ groups: [] has_logo: true hidden: false latest_version: 2019.02.006 publish_time: '2019-01-06T18:35:04.000000' requires: null size: 89747393 tags: - variants - germline - clinical relevance - literature title: ClinVar type: annotator versions: - 2018.04.06 - 2018.04.061 - 2018.04.062 - 2019.01.021 - 2019.01.022 - 2019.01.024 - 2019.01.025 - 2019.02.006 cosmic: code_size: 2648918 commercial_warning: null data_size: 333101056 data_sources: 85.0.0: v85 85.0.1: v85 85.0.2: v85 85.0.3: v85 85.0.4: v85 85.0.5: v85 85.0.6: v85 85.0.7: v85 85.0.8: v85 85.0.9: v85 data_versions: 85.0.0: 85.0.0 85.0.1: 85.0.0 85.0.2: 85.0.0 85.0.3: 85.0.0 85.0.4: 85.0.0 85.0.5: 85.0.0 85.0.6: 85.0.0 85.0.7: 85.0.0 85.0.8: 85.0.0 85.0.9: 85.0.0 datasource: v85 description: Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. developer: citation: 'Forbes, S.A., Beare, D., Boutselakis, H., et al. (2017). COSMIC: somatic cancer genetics at high-resolution. Nucleic Acids Research, 45(D1):D777-D783.' email: support@cravat.us name: Sanger Institute organization: Sanger Institute website: https://cancer.sanger.ac.uk/cosmic groups: [] has_logo: true hidden: false latest_version: 85.0.9 publish_time: '2018-09-19T14:43:32.000000' requires: null size: 335749974 tags: - variants - cancer title: COSMIC type: annotator versions: - 85.0.0 - 85.0.1 - 85.0.2 - 85.0.3 - 85.0.4 - 85.0.5 - 85.0.6 - 85.0.7 - 85.0.8 - 85.0.9 cosmic_gene: code_size: 2706190 commercial_warning: 'For commercial use, contact cosmic@sanger.ac.uk ' data_size: 127188992 data_sources: 85.0.0: v85 85.0.1: v85 85.0.2: v85 85.0.3: v85 85.0.4: v85 85.0.5: v85 85.0.6: v85 91.0.0: v91 data_versions: 85.0.0: 85.0.0 85.0.1: 85.0.0 85.0.2: 85.0.2 85.0.3: 85.0.3 85.0.4: 85.0.3 85.0.5: 85.0.3 85.0.6: 85.0.3 91.0.0: 91.0.0 datasource: v91 description: Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. developer: citation: "Simon A. Forbes et al; COSMIC: somatic cancer genetics at high-resolution,\ \ Nucleic Acids Research, Volume 45, Issue D1, 4 January 2017, Pages D777\u2013\ D783, https://doi.org/10.1093/nar/gkw1121" email: support@cravat.us name: Sanger Institute organization: Sanger Institute website: https://cancer.sanger.ac.uk/cosmic groups: [] has_logo: true hidden: false latest_version: 91.0.0 publish_time: 2020-08-21T18:39:30.060400+0000 requires: - wgcosmic_gene size: 129895182 tags: - genes - cancer title: COSMIC Gene type: annotator versions: - 85.0.0 - 85.0.1 - 85.0.2 - 85.0.3 - 85.0.4 - 85.0.5 - 85.0.6 - 91.0.0 cravat-converter: code_size: 8847 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null datasource: null description: File converter for standard cravat input developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.5 publish_time: '2018-12-10T16:51:10.000000' requires: null size: 8847 tags: null title: Cravat Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 cscape: code_size: 56579 commercial_warning: null data_size: 59852766222 data_sources: 1.0.0: 2017 data_versions: 1.0.0: 1.0.0 datasource: 2017 description: CScape predicts the oncogenic status (disease-driver or neutral) of somatic point mutations in coding and non coding region of the cancer genome. developer: citation: 'Rogers MF, Shihab H, Gaunt TR, Campbell C (2017). CScape: a tool for predicting oncogenic single-point mutations in the cancer genome. Nature Scientific Reports' email: suppor@cravat.us name: '' organization: University of Bristol Integrative Epidemiology Unit website: http://cscape.biocompute.org.uk/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-04-27T15:41:23.202196+0000 requires: null size: 59852822801 tags: - variant effect prediction - cancer - non coding title: CScape type: annotator versions: - 1.0.0 cscape_coding: code_size: 190560 commercial_warning: null data_size: 5212235780 data_sources: 1.0.0: 2017 data_versions: 1.0.0: 1.0.0 datasource: 2017 description: CScape predicts the oncogenic status (disease-driver or neutral) of somatic point mutations in the coding region of the cancer genome. developer: citation: 'Rogers MF, Shihab H, Gaunt TR, Campbell C (2017). CScape: a tool for predicting oncogenic single-point mutations in the cancer genome. Nature Scientific Reports' email: suppor@cravat.us name: '' organization: University of Bristol Integrative Epidemiology Unit website: http://cscape.biocompute.org.uk/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:51:15.415186+0000 requires: null size: 5212426340 tags: - cancer - variant effect prediction - variants title: CScape Coding type: annotator versions: - 1.0.0 csvreporter: code_size: 15565 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: CSV format text file reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.2 publish_time: 2019-06-12T17:11:21.008048+0000 requires: null size: 15565 tags: null title: CSV Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 cvdkp: code_size: 236265 commercial_warning: null data_size: 2467424260 data_sources: 1.0.0: 27 March 2019 data_versions: 1.0.0: 1.0.0 datasource: 27 March 2019 description: Produces an effect weight for the variant in which disease it is found. Weights are assigned according to the strength of their association with disease risk. developer: citation: Cardiovascular Disease Knowledge Portal. 2020 July 14; http://www.kp4cd.org/dataset_downloads/mi email: support@cravat.us name: Broad Institute organization: Broad Institute website: http://www.kp4cd.org/dataset_downloads/mi groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-24T17:53:28.579333+0000 requires: null size: 2467660525 tags: - variants - clinical relevance title: Cardiovascular Disease Knowledge Portal type: annotator versions: - 1.0.0 dann: code_size: 547947 commercial_warning: null data_size: 109595992123 data_sources: 1.0.0: March 2015 1.0.1: March 2015 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: March 2015 description: A deep learning approach for annotating the pathogenicity of genetic variants. developer: citation: 'Quang, Daniel, Yifei Chen, and Xiaohui Xie. "DANN: a deep learning approach for annotating the pathogenicity of genetic variants." Bioinformatics 31.5 (2015): 761-763.' email: support@cravat.us name: Center for Complex Biological Systems, University of California organization: Center for Complex Biological Systems, University of California website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-06-09T22:28:46.996583+0000 requires: - pytabix size: 109596540070 tags: - variant effect prediction title: DANN type: annotator versions: - 1.0.0 - 1.0.1 dann_coding: code_size: 134235 commercial_warning: Freely available for non-commercial use. data_size: 4316903428 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: DANN is a functional prediction score retrained based on the training data of CADD using deep neural network. developer: citation: 'Quang, Daniel, Yifei Chen, and Xiaohui Xie. "DANN: a deep learning approach for annotating the pathogenicity of genetic variants." Bioinformatics 31.5 (2015): 761-763.' email: support@cravat.us name: Center for Complex Biological Systems, University of California organization: Center for Complex Biological Systems, University of California website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:51:15.507628+0000 requires: null size: 4317037663 tags: - variant effect prediction - variants title: DANN Coding type: annotator versions: - 1.0.0 dbcid: code_size: 163951 commercial_warning: null data_size: 47108 data_sources: 1.0.0: v1.0 1.0.1: v1.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v1.0 description: The database of Cancer driver InDels (dbCID) is a highly curated database of driver indels (insertions and deletions) that are likely to engage in cancer development, progression, or therapy. developer: citation: "Yue, Zhenyu et al. \u201CdbCID: a manually curated resource for exploring\ \ the driver indels in human cancer.\u201D Briefings in bioinformatics vol.\ \ 20,5 (2019): 1925-1933. doi:10.1093/bib/bby059" email: support@cravat.us name: '' organization: AnHui University website: http://bioinfo.ahu.edu.cn:8080/dbCID groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-04-26T15:01:40.024228+0000 requires: null size: 211059 tags: - cancer - variants title: 'dbCID: Database of Cancer Driver InDels' type: annotator versions: - 1.0.0 - 1.0.1 dbscsnv: code_size: 109413 commercial_warning: null data_size: 754368512 data_sources: 1.0.0: v1.1 1.1.0: v1.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: v1.1 description: A comprehensive database of all potential human SNVs within splicing consensus regions and their functional annotations. developer: citation: 'Jian, Xueqiu, Eric Boerwinkle, and Xiaoming Liu. "In silico prediction of splice-altering single nucleotide variants in the human genome." Nucleic acids research 42.22 (2014): 13534-13544.' email: support@cravat.us name: Xiaoming Liu organization: University of South Florida website: http://www.liulab.science/dbscsnv.html groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-09-15T20:18:47.460936+0000 requires: null size: 754477925 tags: - variant effect prediction - variants title: dbscSNV type: annotator versions: - 1.0.0 - 1.1.0 dbsnp: code_size: 219906 commercial_warning: null data_size: 27000434688 data_sources: 151.0.0: null 151.0.1: null 151.0.2: v151 151.0.3: v151 151.0.4: v151 151.0.5: v151 data_versions: 151.0.0: 151.0.0 151.0.1: 151.0.0 151.0.2: 151.0.0 151.0.3: 151.0.0 151.0.4: 151.0.0 151.0.5: 151.0.0 datasource: v151 description: Comprehensive database of both single base nucleotide subsitutions and short deletion and insertion polymorphisms developer: citation: 'Sherry, S.T., Ward, M., Kholodov, M., Baker, J., Phan, L., Smigielski, E.M., & Sirotkin, K. (2001). dbSNP: the NCBI database of genetic variation. Nucleic acids research, 29 1, 308-11 .' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/projects/SNP/ groups: [] has_logo: true hidden: false latest_version: 151.0.5 publish_time: 2019-01-30T18:37:40.376164+0000 requires: null size: 27000654594 tags: - variants - noncoding - germline - populations - literature title: dbSNP type: annotator versions: - 151.0.0 - 151.0.1 - 151.0.2 - 151.0.3 - 151.0.4 - 151.0.5 dbsnp-converter: code_size: 10255 commercial_warning: null data_size: 28748574720 data_sources: 1.0.0: null 1.0.1: null 1.0.2: '153' data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.2 datasource: '153' description: Input converter for dbSNP rsid input developer: citation: 'Database of Single Nucleotide Polymorphisms (dbSNP). Bethesda (MD): National Center for Biotechnology Information, National Library of Medicine. (dbSNP Build ID: 151).' email: support@cravat.us name: Kyle Moad organization: In Silico Solutions website: https://www.ncbi.nlm.nih.gov/snp groups: [] has_logo: true hidden: false latest_version: 1.0.2 publish_time: 2019-09-17T16:37:16.536626+0000 requires: null size: 28748584975 tags: - converters title: dbSNP Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 dbsnp_common: code_size: 155037 commercial_warning: null data_size: 1396537348 data_sources: 1.0.1: v154 data_versions: 1.0.1: 1.0.1 datasource: v154 description: Selection of SNPs with a minor allele frequency of 1% or greater is an attempt to identify variants that appear to be reasonably common in the general population. developer: citation: 'Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 2001 Jan 1;29(1):308-11. PMID: 11125122; PMC: PMC29783' email: supprt@cravat.us name: NCBI organization: NCBI website: https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=784649537_AtjYqLFz0CTNkRh8qWf8vOHQpNXp&c=chr1&g=snp151Common groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2023-06-22T17:51:15.602235+0000 requires: null size: 1396692385 tags: - literature - variants title: dbSNP Common type: annotator versions: - 1.0.1 denovo: code_size: 26408 commercial_warning: null data_size: 38727680 data_sources: 1.6.1: null 1.6.2: null 1.6.3: v161 1.6.4: v161 1.6.5: v161 data_versions: 1.6.1: 1.6.1 1.6.2: 1.6.1 1.6.3: 1.6.1 1.6.4: 1.6.1 1.6.5: 1.6.1 datasource: v161 description: Denovo annotation. Denovo is a collection of germline variants in the human genome which are present in children but not their parents. developer: citation: 'Turner, T.N., Yi, Q., Krumm, N., Huddleston, J., Hoekzema, K., Stessman, H.A., Doebley, A., Bernier, R.A., Nickerson, D.A., & Eichler, E.E. (2017). denovo-db: a compendium of human de novo variants. Nucleic Acids Research, 45(D1):D804-D811.' email: support@cravat.us name: Tychele Turner organization: University of Washington website: http://denovo-db.gs.washington.edu/ groups: [] has_logo: true hidden: false latest_version: 1.6.5 publish_time: 2019-01-30T18:37:48.877593+0000 requires: null size: 38754088 tags: - variants - noncoding - germline - denovo - clinical relevance title: Denovo-DB type: annotator versions: - 1.6.1 - 1.6.2 - 1.6.3 - 1.6.4 - 1.6.5 encode_tfbs: code_size: 458489 commercial_warning: null data_size: 577908736 data_sources: 1.0.0: 2012-03 data_versions: 1.0.0: 1.0.0 datasource: 2012-03 description: Human transcription factor binding sites based on ChIP-seq experiments generated by production groups in the ENCODE Consortium. developer: citation: "ENCODE Project Consortium. An integrated encyclopedia of DNA elements\ \ in the human genome. Nature 489, 57\u201374 (2012)." email: '' name: ENCODE Project Consortium organization: ENCODE Project Consortium website: http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeAwgTfbsUniform#TRACK_HTML groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T18:44:35.954192+0000 requires: - hg19 size: 578367225 tags: - non coding title: ENCODE TFBS type: annotator versions: - 1.0.0 ensembl_regulatory_build: code_size: 97964 commercial_warning: null data_size: 49477636 data_sources: 1.0.0: 2020.06.09 1.0.1: 2020.06.09 1.0.2: 2020.06.09 1.0.3: 2020.06.09 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 datasource: 2020.06.09 description: An up-to-date and comprehensive summary of regulatory features across the genome, as well as popular curated external resources. developer: citation: 'Zerbino DR, Wilder SP, Johnson N, Juettemann T, Flicek PR. The ensembl regulatory build. Genome Biology. 2015 Mar;16:56. DOI: 10.1186/s13059-015-0621-5.' email: support@cravat.us name: Ensembl organization: Ensembl website: https://uswest.ensembl.org/info/genome/funcgen/regulatory_build.html groups: [] has_logo: true hidden: false latest_version: 1.0.3 publish_time: 2020-09-29T15:47:28.142064+0000 requires: - wgensembl_regulatory_build size: 49575600 tags: - non coding title: Ensembl Regulatory Build type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 esp6500: code_size: 1454140 commercial_warning: null data_size: 114604032 data_sources: 1.0.0: null 6500.2.0: null 6500.2.1: v.0.0.30 6500.2.2: v.0.0.30 6500.2.3: v0.0.30 6500.2.4: v0.0.30 6500.2.5: v0.0.30 6500.2.6: v0.0.30 data_versions: 1.0.0: 1.0.0 6500.2.0: 1.0.0 6500.2.1: 1.0.0 6500.2.2: 1.0.0 6500.2.3: 1.0.0 6500.2.4: 1.0.0 6500.2.5: 1.0.0 6500.2.6: 1.0.0 datasource: v0.0.30 description: Exome Sequencing Project 6500 developer: citation: Exome Variant Server, NHLBI GO Exome Sequencing Project (ESP), Seattle, WA email: evsserver@uw.edu name: University of Washington organization: University of Washington website: http://evs.gs.washington.edu/EVS/ groups: [] has_logo: true hidden: false latest_version: 6500.2.6 publish_time: 2019-01-30T01:56:13.545867+0000 requires: - wgesp6500 size: 116058172 tags: - allele frequency title: ESP6500 type: annotator versions: - 1.0.0 - 6500.2.0 - 6500.2.1 - 6500.2.2 - 6500.2.3 - 6500.2.4 - 6500.2.5 - 6500.2.6 ess_gene: code_size: 25861 commercial_warning: null data_size: 321540 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.04: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.04 3.5.5: 3.5.04 3.5.6: 3.5.04 3.5.7: 3.5.04 3.5.8: 3.5.04 datasource: dbNSFP v4.0b1 description: Essential Genes provides a database of genetic variation & mutational burden in 2472 human orthologs developer: citation: 'Georgi, B., Voight, B.F., & Bucan, M. (2013). From Mouse to Human: Evolutionary Genomics Analysis of Human Orthologs of Essential Genes. PLoS genetics 9(5): e1003484.' email: support@cravat.us name: "Benjamin Georgi, Benjamin F. Voight, Maja Bu\u0107an" organization: Department of Genetics, University of Pennsylvania website: https://doi.org/10.1371/journal.pgen.1003484 groups: [] has_logo: true hidden: false latest_version: 3.5.8 publish_time: 2019-01-30T18:39:07.249427+0000 requires: null size: 347401 tags: - genes title: Essential Genes type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.5 - 3.5.6 - 3.5.7 - 3.5.8 exac_gene: code_size: 23546 commercial_warning: null data_size: 2453504 data_sources: 0.3.1: null 0.3.11: null 0.3.12: null 0.3.13: v0.3.1 0.3.14: v0.3.1 0.3.15: v0.3.1 0.3.16: v0.3.1 0.3.17: v0.3.1 0.3.18: v0.3.1 0.3.19: v0.3.1 0.3.20: v0.3.1 0.3.21: v0.3.1 data_versions: 0.3.1: 0.3.1 0.3.11: 0.3.1 0.3.12: 0.3.1 0.3.13: 0.3.1 0.3.14: 0.3.1 0.3.15: 0.3.1 0.3.16: 0.3.1 0.3.17: 0.3.1 0.3.18: 0.3.1 0.3.19: 0.3.1 0.3.20: 0.3.1 0.3.21: 0.3.1 datasource: v0.3.1 description: ExAC Functional Gene Constraint & CNV Scores provides probability of LoF tolerance/intolerance developer: citation: Lek, M., Karczewski, K. J., Minikel, E. V., et al. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285. email: support@cravat.us name: ExAC organization: Exome Aggregation Consortium website: http://exac.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 0.3.21 publish_time: 2019-01-30T18:39:16.427766+0000 requires: null size: 2477050 tags: - genes - germline - populations title: ExAC Gene and CNV type: annotator versions: - 0.3.1 - 0.3.11 - 0.3.12 - 0.3.13 - 0.3.14 - 0.3.15 - 0.3.16 - 0.3.17 - 0.3.18 - 0.3.19 - 0.3.20 - 0.3.21 excelreporter: code_size: 1487642 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Microsoft Excel reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.2 publish_time: '2018-08-14T15:05:24.000000' requires: null size: 1487642 tags: null title: Excel Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 fathmm: code_size: 19454 commercial_warning: null data_size: 10401128448 data_sources: 2.3.0: null 2.3.01: null 2.3.02: v2.3 2.3.03: v2.3 2.3.4: v2.3 2.3.5: v2.3 2.3.6: v2.3 2.3.7: v2.3 data_versions: 2.3.0: 2.3.0 2.3.01: 2.3.0 2.3.02: 2.3.0 2.3.03: 2.3.0 2.3.4: 2.3.0 2.3.5: 2.3.0 2.3.6: 2.3.0 2.3.7: 2.3.0 datasource: v2.3 description: Functional analysis through hidden markov models. developer: citation: Shihab, H. A., Gough, J., Mort, M., Cooper, D. N., Day, I. N., & Gaunt, T. R. (2014). Ranking non-synonymous single nucleotide polymorphisms based on disease concepts. Human genomics, 8(1), 11. email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/index.html groups: [] has_logo: true hidden: false latest_version: 2.3.7 publish_time: 2019-01-30T18:39:44.613445+0000 requires: - wgfathmm size: 10401147902 tags: - variant effect prediction - variants title: FATHMM type: annotator versions: - 2.3.0 - 2.3.01 - 2.3.02 - 2.3.03 - 2.3.4 - 2.3.5 - 2.3.6 - 2.3.7 fathmm_mkl: code_size: 135774 commercial_warning: null data_size: 5069600772 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: A database capable of predicting the effects of coding variants using nucleotide-based HMMs. developer: citation: 'Shihab, Hashem A., et al. "An integrative approach to predicting the functional effects of non-coding and coding sequence variation." Bioinformatics 31.10 (2015): 1536-1543.' email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/fathmmMKL.htm groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:52:40.102321+0000 requires: null size: 5069736546 tags: - variant effect prediction - variants title: FATHMM MKL type: annotator versions: - 1.0.0 fathmm_xf: code_size: 112331 commercial_warning: null data_size: 38602925793 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Enhanced Accuracy in Predicting the Functional Consequences of Coding Single Nucleotide Variants (SNVs). developer: citation: 'Rogers, Mark F., et al. "Supplementary information for FATHMM-XF: accurate prediction of pathogenic point mutations via extended features." (2015).' email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/fathmm-xf/index.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-14T18:10:52.201216+0000 requires: - pytabix size: 38603038124 tags: - variant effect prediction - non coding title: FATHMM type: annotator versions: - 1.0.0 fathmm_xf_coding: code_size: 106396 commercial_warning: null data_size: 4061906948 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: Enhanced Accuracy in Predicting the Functional Consequences of Coding Single Nucleotide Variants (SNVs). developer: citation: 'Rogers, Mark F., et al. "Supplementary information for FATHMM-XF: accurate prediction of pathogenic point mutations via extended features." (2015).' email: support@cravat.us name: Chris Campbell organization: University of Bristol Integrative Epidemiology Unit website: http://fathmm.biocompute.org.uk/fathmm-xf/index.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:52:40.158677+0000 requires: null size: 4062013344 tags: - variant effect prediction - variants title: FATHMM XF Coding type: annotator versions: - 1.0.0 fitcons: code_size: 557586 commercial_warning: null data_size: 4229273604 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: fitCons predicts the fraction of genomic positions belonging to a specific function class that are under selective pressure. developer: citation: 'Gulko, Brad, et al. "A method for calculating probabilities of fitness consequences for point mutations across the human genome." Nature genetics 47.3 (2015): 276-283.' email: support@cravat.us name: Department of Biological Statistics & Computational Biology, Cornell University organization: Department of Biological Statistics & Computational Biology, Cornell University website: http://compgen.cshl.edu/fitCons/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:52:40.223456+0000 requires: null size: 4229831190 tags: - variant effect prediction - variants title: fitCons type: annotator versions: - 1.0.0 flank_seq: code_size: 25691 commercial_warning: null data_size: 6014561977 data_sources: 0.0.1: null 0.0.2: null 0.0.3: null data_versions: 0.0.1: 0.0.1 0.0.2: 0.0.1 0.0.3: 0.0.1 datasource: null description: Reference and alternate bases with flanking sequence developer: citation: Wood, M. A., et al. (2018). neoepiscope Improves Neoepitope Prediction with Multi-variant Phasing. BioRxiv, 418129. email: support@cravat.us name: Mary Wood organization: Oregon Health and Science University website: https://github.com/pdxgx/neoepiscope groups: [] has_logo: true hidden: false latest_version: 0.0.3 publish_time: 2019-03-07T18:46:08.026166+0000 requires: null size: 6014587668 tags: - variants title: Flanking Sequence type: annotator versions: - 0.0.1 - 0.0.2 - 0.0.3 genehancer: code_size: 64387 commercial_warning: Freely available for non-commercial use. data_size: 42317828 data_sources: 1.0.0: v4.7 1.1.0: v4.7 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.7 description: GeneHancer is a database of genome-wide enhancer-to-gene and promoter-to-gene associations. developer: citation: 'Rosen, N., V. Chalifa-Caspi, O. Shmueli, A. Adato, M. Lapidot, J. Stampnitzky, M. Safran, and D. Lancet (2003). GeneLoc: Exon-based integration of human genome maps. Bioinformatics 19(S1). URL: http://genecards.weizmann.ac.il/geneloc' email: support@cravat.us name: Weizmann Institute of Science organization: Weizmann Institute of Science website: https://genecards.weizmann.ac.il/geneloc_prev/index.shtml groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-11-10T20:40:26.352043+0000 requires: - wggenehancer - wgenhancer size: 42382215 tags: - non coding title: GeneHancer type: annotator versions: - 1.0.0 - 1.1.0 genocanyon: code_size: 86902 commercial_warning: null data_size: 4294141956 data_sources: 1.0.0: v4.2 data_versions: 1.0.0: 1.0.0 datasource: v4.2 description: GenoCanyon is a whole-genome functional annotation approach based on unsupervised statistical learning. It integrates genomic conservation measures and biochemical annotation data to predict the functional potential at each nucleotid. developer: citation: Lu, Q., Hu, Y., Sun, J. et al. A Statistical Framework to Predict Functional Non-Coding Regions in the Human Genome Through Integrated Analysis of Annotation Data. Sci Rep 5, 10576 (2015). https://doi.org/10.1038/srep10576 email: support@cravat.us name: '' organization: Yale University website: http://zhaocenter.org/GenoCanyon_Index.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-05-26T14:37:46.681909+0000 requires: null size: 4294228858 tags: - non coding title: GenoCanyon type: annotator versions: - 1.0.0 gerp: code_size: 19670 commercial_warning: null data_size: 4685320192 data_sources: 3.5.0: null 3.5.01: null 3.5.02: null 3.5.03: dbNSFP v4.0b1 3.5.04: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.6.1: dbNSFP v4.0b1 3.6.2: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.0 3.5.5: 3.5.0 3.5.6: 3.5.0 3.6.1: 3.5.0 3.6.2: 3.5.0 datasource: dbNSFP v4.0b1 description: Genomic Evolutionary Rate Profiling developer: citation: Davydov, E. V., Goode, D. L., Sirota, M., Cooper, G. M., Sidow, A., & Batzoglou, S. (2010). Identifying a high fraction of the human genome to be under selective constraint using GERP++. PLoS computational biology, 6(12), e1001025. email: support@cravat.us name: Stanford University Sidow Lab organization: Stanford University Sidow Lab website: http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html groups: [] has_logo: true hidden: false latest_version: 3.6.2 publish_time: 2019-01-30T18:39:54.218255+0000 requires: - wggerp size: 4685339862 tags: - variants - evolution title: GERP++ type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.5 - 3.5.6 - 3.6.1 - 3.6.2 geuvadis: code_size: 32616 commercial_warning: null data_size: 262144 data_sources: 0.0.1: null data_versions: 0.0.1: 0.0.1 datasource: null description: Significant snp-gene associations reported by the Geuvadis project developer: citation: 'Lappalainen, Tuuli, et al. "Transcriptome and genome sequencing uncovers functional variation in humans." Nature 501.7468 (2013): 506-511.' email: support@cravat.us name: In Silico Solutions organization: dbNSFP website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 0.0.1 publish_time: 2020-08-21T18:51:24.668465+0000 requires: null size: 294760 tags: - variants title: Geuvadis eQTLs type: annotator versions: - 0.0.1 ghis: code_size: 30500 commercial_warning: null data_size: 606208 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 datasource: dbNSFP v4.0b1 description: Gene haploinsufficiency scoring developer: citation: Steinberg, J., Honti, F., Meader, S., & Webber, C. (2015). Haploinsufficiency predictions without study bias. Nucleic acids research, 43(15), e101-e101. email: support@cravat.us name: Julia Steinberg, Frantisek Honti, Stephen Meader, Caleb Webber organization: 1MRC Functional Genomics Unit, University of Oxford website: https://doi.org/10.1093/nar/gkv474 groups: [] has_logo: true hidden: false latest_version: 3.5.5 publish_time: 2019-01-30T18:40:02.446704+0000 requires: - wgghis size: 636708 tags: - genes title: GHIS type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.4 - 3.5.5 gnomad: code_size: 169521 commercial_warning: null data_size: 17426890752 data_sources: 2.0.2: null '2.1': null 2.1.0: null 2.1.01: null 2.1.02: null 2.1.03: v2.1 2.1.04: v2.1 2.1.5: v2.1 2.1.6: v2.1 2.1.7: v2.1 2.1.8: v2.1 2.2.0: v2.1 data_versions: 2.0.2: 2.0.2 '2.1': '2.1' 2.1.0: '2.1' 2.1.01: '2.1' 2.1.02: '2.1' 2.1.03: '2.1' 2.1.04: '2.1' 2.1.5: '2.1' 2.1.6: '2.1' 2.1.7: '2.1' 2.1.8: '2.1' 2.2.0: '2.1' datasource: v2.1 description: Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects developer: citation: Lek, M., Karczewski, K. J., Minikel, E. V., et al. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285. email: '' name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 2.2.0 publish_time: 2019-01-30T18:40:12.357216+0000 requires: - wggnomad - wgallelefrequency size: 17427060273 tags: - allele frequency title: gnomAD type: annotator versions: - 2.0.2 - '2.1' - 2.1.0 - 2.1.01 - 2.1.02 - 2.1.03 - 2.1.04 - 2.1.5 - 2.1.6 - 2.1.7 - 2.1.8 - 2.2.0 gnomad3: code_size: 166721 commercial_warning: null data_size: 44017865728 data_sources: 1.0.0: v3 1.1.0: v3 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v3 description: Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects developer: citation: Karczewski, Konrad J., et al. "The Mutational Constraint Spectrum Quantified from Variation in 141,456 Humans." BioRxiv, Apr. 2020, p. 531210. www.biorxiv.org, doi:10.1101/531210. email: '' name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-08-21T18:53:57.553853+0000 requires: - wggnomad3 size: 44018032449 tags: - allele frequency title: gnomAD3 type: annotator versions: - 1.0.0 - 1.1.0 gnomad3_counts: code_size: 98986 commercial_warning: null data_size: 3635828740 data_sources: 1.0.0: v3.1 1.1.0: v3.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: v3.1 description: Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects developer: citation: Karczewski, Konrad J., et al. "The Mutational Constraint Spectrum Quantified from Variation in 141,456 Humans." BioRxiv, Apr. 2020, p. 531210. www.biorxiv.org, doi:10.1101/531210. email: '' name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-06-28T13:22:16.519131+0000 requires: null size: 3635927726 tags: - allele frequency title: gnomAD3 Counts type: annotator versions: - 1.0.0 - 1.1.0 gnomad_gene: code_size: 168544 commercial_warning: null data_size: 10055680 data_sources: 2.1.03: null 2.1.04: v2.1 2.1.5: v2.1 2.1.6: v2.1 2.1.7: v2.1 2.1.8: v2.1 data_versions: 2.1.03: 2.1.03 2.1.04: 2.1.03 2.1.5: 2.1.03 2.1.6: 2.1.03 2.1.7: 2.1.03 2.1.8: 2.1.03 datasource: v2.1 description: Gene level population statistics from gnomAD developer: citation: https://www.nature.com/articles/nature19057 email: support@cravat.us name: Broad Institute organization: Broad Institute website: http://gnomad.broadinstitute.org/ groups: [] has_logo: true hidden: false latest_version: 2.1.8 publish_time: 2019-01-30T18:40:20.370464+0000 requires: - wggnomad_gene size: 10224224 tags: - genes - populations title: gnomAD Gene type: annotator versions: - 2.1.03 - 2.1.04 - 2.1.5 - 2.1.6 - 2.1.7 - 2.1.8 go: code_size: 2316657 commercial_warning: null data_size: 31160324 data_sources: 2018.03.08: null 2018.12.02: null 2018.12.021: null 2018.12.022: 2018.12.06 2018.12.023: 2018.12.06 2019.03.20: 2018.12.06 2019.05.13: 2018.12.06 2019.08.02: 2018.12.06 2019.08.16: 2018.12.06 2019.2.006: 2018.12.06 2020.12.03: 2020.12.03 2021.02.04: 2020.12.03 2022.02.01: 2023.02.01 2022.10.05: 2022.10.05 2022.11.01: 2023.01.01 2024.02.01: 2024.02.01 data_versions: 2018.03.08: 2018.03.08 2018.12.02: 2018.03.08 2018.12.021: 2018.12.021 2018.12.022: 2018.12.021 2018.12.023: 2018.12.021 2019.03.20: 2018.12.021 2019.05.13: 2018.12.021 2019.08.02: 2018.12.021 2019.08.16: 2018.12.021 2019.2.006: 2018.12.021 2020.12.03: 2020.12.03 2021.02.04: 2021.02.04 2022.02.01: 2022.02.01 2022.10.05: 2022.10.05 2022.11.01: 2022.11.01 2024.02.01: 2024.02.01 datasource: 2024.02.01 description: Gene Ontology (GO) project provides a comprehensive computable knowledge regarding the functions of genes and gene products. developer: citation: 'Ashburner, M., Ball, C. A., Blake, J. A., et al. (2000). Gene Ontology: tool for the unification of biology. Nature genetics, 25(1), 25.' email: support@cravat.us name: Gene Ontology Consortium organization: Gene Ontology Consortium website: http://geneontology.org/ groups: [] has_logo: true hidden: false latest_version: 2024.02.01 publish_time: 2024-03-18T16:04:10.943119+0000 requires: - wggo size: 33476981 tags: - genes title: Gene Ontology type: annotator versions: - 2018.03.08 - 2018.12.02 - 2018.12.021 - 2018.12.022 - 2018.12.023 - 2019.2.006 - 2019.03.20 - 2019.05.13 - 2019.08.02 - 2019.08.16 - 2020.12.03 - 2021.02.04 - 2022.02.01 - 2022.10.05 - 2022.11.01 - 2024.02.01 grasp: code_size: 62565 commercial_warning: 'For commercial use, contact johnsonad2@nhlbi.nih.gov. ' data_size: 714883072 data_sources: 2.0.0: null 2.0.1: null 2.0.2: null 2.0.3: null 2.0.4: v2.0.0.0 2.0.5: v2.0.0.0 2.0.6: v2.0.0.0 2.0.7: v2.0.0.0 data_versions: 2.0.0: 2.0.0 2.0.1: 2.0.1 2.0.2: 2.0.2 2.0.3: 2.0.2 2.0.4: 2.0.2 2.0.5: 2.0.2 2.0.6: 2.0.2 2.0.7: 2.0.2 datasource: v2.0.0.0 description: Genome-Wide Repository of Associations Between SNPs and Phenotypes developer: citation: "Leslie R, O\u2019Donnell CJ, Johnson AD (2014) GRASP: analysis of genotype-phenotype\ \ results from 1,390 genome-wide association studies and corresponding open\ \ access database. Bioinformatics 30(12), i185-94" email: support@cravat.us name: NIH organization: NIH website: https://grasp.nhlbi.nih.gov/Overview.aspx groups: [] has_logo: true hidden: false latest_version: 2.0.7 publish_time: 2019-01-30T18:41:07.241162+0000 requires: - wggrasp size: 714945637 tags: - variants - non coding - clinical relevance - literature title: GRASP type: annotator versions: - 2.0.0 - 2.0.1 - 2.0.2 - 2.0.3 - 2.0.4 - 2.0.5 - 2.0.6 - 2.0.7 gtex: code_size: 23386 commercial_warning: null data_size: 18395136 data_sources: 6.0.0: null 6.0.01: null 7.0.0: null 7.0.1: v7 7.0.2: v7 7.0.3: v7 7.0.4: v7 8.0.0: v8 data_versions: 6.0.0: 6.0.0 6.0.01: 6.0.0 7.0.0: 6.0.0 7.0.1: 7.0.1 7.0.2: 7.0.1 7.0.3: 7.0.1 7.0.4: 7.0.1 8.0.0: 8.0.0 datasource: v8 description: Genotype-tissue expression developer: citation: https://gtexportal.org/home/faq#citePortal email: support@cravat.us name: GTEx Consortium organization: The Broad Institute of MIT and Harvard website: https://gtexportal.org/home/ groups: [] has_logo: true hidden: false latest_version: 8.0.0 publish_time: 2024-02-13T13:23:23.206995+0000 requires: - wggtex size: 18418522 tags: - variants title: GTEx eQTLs type: annotator versions: - 6.0.0 - 6.0.01 - 7.0.0 - 7.0.1 - 7.0.2 - 7.0.3 - 7.0.4 - 8.0.0 gwas_catalog: code_size: 120874 commercial_warning: null data_size: 38876160 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: GWAS Catalog Annotator developer: citation: 'Buniello A, MacArthur JAL, Cerezo M, Harris LW, Hayhurst J, Malangone C, McMahon A, Morales J, Mountjoy E, Sollis E, Suveges D, Vrousgou O, Whetzel PL, Amode R, Guillen JA, Riat HS, Trevanion SJ, Hall P, Junkins H, Flicek P, Burdett T, Hindorff LA, Cunningham F and Parkinson H. The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019. Nucleic Acids Research, 2019, Vol. 47 (Database issue): D1005-D1012.' email: gwas-info@ebi.ac.uk. name: NHGRI-EBI organization: NHGRI-EBI website: https://www.ebi.ac.uk/gwas/home groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-28T21:36:06.501319+0000 requires: - wggwas_catalog size: 38997034 tags: - variants - non coding - clinical relevance - literature title: GWAS Catalog type: annotator versions: - 1.0.0 haploreg_afr: code_size: 9959 commercial_warning: null data_size: 10396768256 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in African populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T16:58:47.649809+0000 requires: - dbsnp - wghaploreg_afr size: 10396778215 tags: - non coding - variants title: HaploReg African type: annotator versions: - 1.0.0 - 1.1.0 haploreg_amr: code_size: 9934 commercial_warning: null data_size: 15905863680 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in American populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T17:26:28.706126+0000 requires: - dbsnp - wghaploreg_amr size: 15905873614 tags: - non coding - variants title: HaploReg American type: annotator versions: - 1.0.0 - 1.1.0 haploreg_asn: code_size: 10034 commercial_warning: null data_size: 12917386240 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in Asian populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-31T14:47:03.039024+0000 requires: - dbsnp - wghaploreg_asn size: 12917396274 tags: - non coding - variants title: HaploReg Asian type: annotator versions: - 1.0.0 - 1.1.0 haploreg_eur: code_size: 9993 commercial_warning: null data_size: 15219340288 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: SNPs in LD with the variant in European populations developer: citation: "Lucas D. Ward, Manolis Kellis, HaploReg: a resource for exploring chromatin\ \ states, conservation, and regulatory motif alterations within sets of genetically\ \ linked variants, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012,\ \ Pages D930\u2013D934, https://doi.org/10.1093/nar/gkr917" email: luke@lukeward.net name: Luke Ward organization: MIT Kellis Lab website: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php groups: - haploreg_group has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-12-03T17:43:34.345345+0000 requires: - dbsnp - wghaploreg_eur size: 15219350281 tags: - non coding - variants title: HaploReg European type: annotator versions: - 1.0.0 - 1.1.0 hereditary_cancer: code_size: 343573 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Reports on variants in a gene list implicated in nine hereditary cancer types by the Cancer Gene Census developer: citation: '' email: support@opencravat.org name: OpenCRAVAT Team organization: KarchinLab website: https://opencravat.org groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-04-13T20:13:15.610259+0000 requires: - clinvar - cosmic - dbsnp - gnomad3 - oncokb - cgc size: 343573 tags: null title: Hereditary Cancer type: package versions: - 1.0.0 hg38: code_size: 83316 commercial_warning: null data_size: 7225357312 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null 1.1.7: null 1.1.8: null 1.1.9: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.1.0: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.1.5: 1.0.0 1.1.6: 1.0.0 1.1.7: 1.0.0 1.1.8: 1.0.0 1.1.9: 1.0.0 datasource: null description: Gene mapper using UCSC Gencode developer: citation: '' email: support@cravat.su name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.9 publish_time: '2018-11-16T17:09:25.000000' requires: null size: 7225440628 tags: null title: UCSC hg38 Gene Mapper type: mapper versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 - 1.1.6 - 1.1.7 - 1.1.8 - 1.1.9 hgdp: code_size: 1998931 commercial_warning: 'For academic use only. ' data_size: 61444096 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Human Genome Diversity Panel (HGDP) DNA from individuals among 51 different populations. developer: citation: '' email: '' name: Jun Z. Li et al. organization: Stanford University School of Medicine website: https://www.hagsc.org/hgdp/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2021-06-28T21:36:06.657764+0000 requires: null size: 63443027 tags: - allele frequency title: HGDP type: annotator versions: - 1.0.0 hgvs: code_size: 136207 commercial_warning: null data_size: 205697024 data_sources: 1.0.0: null 1.0.1: null 1.0.2: v15.11 1.0.3: v15.11 1.0.4: v15.11 1.0.5: v15.11 1.0.6: v15.11 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 datasource: v15.11 description: Variants described in HGVS format developer: citation: 'den Dunnen, J. T., Dalgleish, R., Maglott, D. R., et al. (2016). HGVS recommendations for the description of sequence variants: 2016 update. Human mutation, 37(6), 564-569.' email: support@cravat.us name: Human Genome Variation Society organization: Human Genome Variation Society website: http://www.hgvs.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.6 publish_time: 2019-01-30T18:41:41.109583+0000 requires: - wghgvs size: 205833231 tags: - variants title: HGVS Format type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 intact: code_size: 41826 commercial_warning: null data_size: 8708096 data_sources: 2018.11.30: 4.0.0 2019.03.20: 2018.11.30 2019.05.13: 2018.11.30 2019.1.24: 4.0.0 2019.1.25: 2018.11.30 2019.2.06: 2018.11.30 data_versions: 2018.11.30: 2018.11.30 2019.03.20: 2018.11.30 2019.05.13: 2018.11.30 2019.1.24: 2018.11.30 2019.1.25: 2018.11.30 2019.2.06: 2018.11.30 datasource: 2018.11.30 description: Molecular interaction data developer: citation: "Orchard, S., Ammari, M., Aranda, B., et al. (2013). The MIntAct project\xE2\ \u20AC\u201DIntAct as a common curation platform for 11 molecular interaction\ \ databases. Nucleic acids research, 42(D1), D358-D363." email: support@cravat.us name: Orchard S et al. organization: European Bioinformatics Institute (EMBL-EBI) website: https://www.ebi.ac.uk/intact/ groups: [] has_logo: true hidden: false latest_version: 2019.05.13 publish_time: 2019-01-30T18:41:50.829659+0000 requires: - wgintact size: 8749922 tags: - genes - interactions - dbnsfp title: IntAct type: annotator versions: - 2018.11.30 - 2019.1.24 - 2019.1.25 - 2019.2.06 - 2019.03.20 - 2019.05.13 interpro: code_size: 147116 commercial_warning: null data_size: 5845157892 data_sources: 71.0.0: 4.0.0 71.0.1: v71 71.0.2: v71 71.0.3: v71 71.0.4: v71 71.0.5: v71 71.0.6: v71 71.1.0: v71 71.2.0: v71 data_versions: 71.0.0: 71.0.0 71.0.1: 71.0.0 71.0.2: 71.0.0 71.0.3: 71.0.0 71.0.4: 71.0.0 71.0.5: 71.0.0 71.0.6: 71.0.0 71.1.0: 71.1.0 71.2.0: 71.1.0 datasource: v71 description: Protein sequence analysis & classification developer: citation: 'Mitchell, A. L., Attwood, T. K., Babbitt, P. C., et al. (2018). InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic acids research, 47(D1), D351-D360.' email: support@cravat.us name: Alex L. Mitchell et al. organization: European Bioinformatics Institute (EMBL-EBI) website: https://www.ebi.ac.uk/interpro/ groups: [] has_logo: true hidden: false latest_version: 71.2.0 publish_time: 2019-01-30T18:41:58.811979+0000 requires: - wginterpro size: 5845305008 tags: - genes title: InterPro type: annotator versions: - 71.0.0 - 71.0.1 - 71.0.2 - 71.0.3 - 71.0.4 - 71.0.5 - 71.0.6 - 71.1.0 - 71.2.0 javierre_promoters: code_size: 28654 commercial_warning: null data_size: 544768 data_sources: 2019.03.20: November 17, 2016 2019.2.13: November 17, 2016 2019.2.22: November 17, 2016 2019.2.5: November 17, 2016 2019.3.12: November 17, 2016 data_versions: 2019.03.20: 2019.2.5 2019.2.13: 2019.2.5 2019.2.22: 2019.2.5 2019.2.5: 2019.2.5 2019.3.12: 2019.2.5 datasource: November 17, 2016 description: Javierre et al promoter-interacting regions | Promoter capture Hi-C was used to identify interacting regions of 31,253 promoters that are significantly associated across 17 human primary hematopoietic cell types. developer: citation: Javierre, B. M., Burren S.E. et al. (2016). Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters. Cell, 167(5), 1369-1384. email: null name: null organization: The Babraham Institute, Babraham Research Campus, Cambridge website: https://doi.org/10.1016/j.cell.2016.09.037 groups: [] has_logo: true hidden: false latest_version: 2019.03.20 publish_time: 2019-02-11T20:29:36.950176+0000 requires: null size: 573422 tags: - variants - noncoding - genomic features title: Promoter IR type: annotator versions: - 2019.2.5 - 2019.2.13 - 2019.2.22 - 2019.3.12 - 2019.03.20 linsight: code_size: 144517 commercial_warning: For commercial use, contact xmliu.uth@gmail.com data_size: 9191047168 data_sources: 1.0.0: null 2018.10.19: 2018.10.19 2018.10.191: 2018.10.19 2018.10.192: 2018.10.19 2019.02.006: 2018.10.19 2019.03.20: 2018.10.19 2019.05.13: 2018.10.19 2021.01.08: 2018.10.19 data_versions: 1.0.0: 1.0.0 2018.10.19: 2018.10.19 2018.10.191: 2018.10.19 2018.10.192: 2018.10.19 2019.02.006: 2018.10.19 2019.03.20: 2018.10.19 2019.05.13: 2018.10.19 2021.01.08: 2018.10.19 datasource: 2018.10.19 description: LINSIGHT developer: citation: Huang, Y. F., Gulko, B., & Siepel, A. (2017). Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data. Nature genetics, 49(4), 618. email: asiepel@cshl.edu name: Adam Siepel organization: Cold Spring Harbor Laboratory website: http://github.com/CshlSiepelLab/LINSIGHT/blob/master/README.md groups: [] has_logo: true hidden: false latest_version: 2021.01.08 publish_time: '2018-11-01T20:59:34.000000' requires: null size: 9191191685 tags: - evolution - non coding - variant effect prediction - variants title: LINSIGHT type: annotator versions: - 1.0.0 - 2018.10.19 - 2018.10.191 - 2018.10.192 - 2019.02.006 - 2019.03.20 - 2019.05.13 - 2021.01.08 litvar: code_size: 377439 commercial_warning: null data_size: 0 data_sources: 1.0.0: Live 1.1.0: Live 1.2.0: Live data_versions: 1.0.0: null 1.1.0: null 1.2.0: null datasource: Live description: LitVar allows the search and retrieval of variant relevant information from biomedical literature. developer: citation: 'Allot, Alexis, et al. "LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC." Nucleic acids research 46.W1 (2018): W530-W536.' email: support@cravat.us name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/LitVar/#!?query= groups: [] has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-12-03T16:55:04.281555+0000 requires: - dbsnp size: 377439 tags: - literature title: LitVar type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 litvar_full: code_size: 354398 commercial_warning: null data_size: 211492864 data_sources: 2.0.0: null data_versions: 2.0.0: 2.0.0 datasource: null description: LitVar allows the search and retrieval of variant relevant information from biomedical literature. developer: citation: 'Allot, Alexis, et al. "LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC." Nucleic acids research 46.W1 (2018): W530-W536.' email: support@opencravat.org name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/LitVar/#!?query= groups: [] has_logo: true hidden: false latest_version: 2.0.0 publish_time: 2024-03-06T14:54:30.889566+0000 requires: null size: 211847262 tags: - literature - variants title: LitVar Full type: annotator versions: - 2.0.0 loftool: code_size: 21105 commercial_warning: null data_size: 503808 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 datasource: dbNSFP v4.0b1 description: Gene intolerance score based on loss-of-function variants developer: citation: 'Fadista, J., Oskolkov, N., Hansson, O., & Groop, L. (2016). LoFtool: a gene intolerance score based on loss-of-function variants in 60 706 individuals. Bioinformatics, 33(4), 471-474.' email: support@cravat.us name: "Jo\xE3o Fadista, Nikolay Oskolkov, Ola Hansson, Leif Groop" organization: Lund University Diabetes Centre website: https://doi.org/10.1093/bioinformatics/btv602 groups: [] has_logo: true hidden: false latest_version: 3.5.5 publish_time: 2019-01-30T18:42:16.687716+0000 requires: - wgloftool size: 524913 tags: - genes title: LoFtool type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.4 - 3.5.5 lrt: code_size: 79269 commercial_warning: null data_size: 3874093060 data_sources: 1.0.0: v4.1 data_versions: 1.0.0: 1.0.0 datasource: v4.1 description: The likelihood ratio test (LRT) can accurately identify a subset of deleterious mutations that disrupt highly conserved amino acids within protein-coding sequences. developer: citation: 'Chun, Sung, and Justin C. Fay. "Identification of deleterious mutations within three human genomes." Genome research 19.9 (2009): 1553-1561.' email: support@cravat.us name: Sung Chun and Justin C. Fay organization: Computational Biology Program, University of Washington website: http://www.genetics.wustl.edu/jflab/lrt_query.html groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:52:40.494717+0000 requires: null size: 3874172329 tags: - variant effect prediction - variants title: Likelihood Ratio Test type: annotator versions: - 1.0.0 mavedb: code_size: 64932 commercial_warning: null data_size: 2021380 data_sources: 1.0.0: v1.7.1 1.0.1: v1.7.2 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v1.7.2 description: MaveDB is a public repository for datasets from Multiplexed Assays of Variant Effect (MAVEs). developer: citation: 'Esposito, Daniel, et al. "MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect." Genome biology 20.1 (2019): 1-11.' email: support@cravat.us name: Fowler Lab organization: University of Washington, Department of Genome Sciences website: https://www.mavedb.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-05-25T03:11:40.549942+0000 requires: null size: 2086312 tags: - functional studies title: MaveDB type: annotator versions: - 1.0.0 - 1.0.1 metalr: code_size: 240699 commercial_warning: null data_size: 3968645124 data_sources: 1.0.0: v4.1 1.0.1: v4.1 1.0.2: v4.1 1.0.3: v4.1 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 datasource: v4.1 description: MetaLR creates an ensemble-based prediction score by using machine learning and logistic regression. developer: citation: Dong C, Wei P, Jian X, Gibbs R, Boerwinkle E, Wang K* and Liu X*. (2015) Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies. Human Molecular Genetics 24(8):2125-2137. email: support@cravat.us name: Chengliang Dong organization: University of Southern California, Biostatistics Department website: https://academic.oup.com/hmg/article/24/8/2125/651446 groups: [] has_logo: true hidden: false latest_version: 1.0.3 publish_time: 2020-09-14T14:59:15.764989+0000 requires: null size: 3968885823 tags: - variant effect prediction - variants title: MetaLR type: annotator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 metasvm: code_size: 269643 commercial_warning: null data_size: 3968694276 data_sources: 1.0.0: v4.1 1.0.1: v4.1 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v4.1 description: MetaSVM creates an ensemble-based prediction score by using a support vector machine model. developer: citation: Dong C, Wei P, Jian X, Gibbs R, Boerwinkle E, Wang K* and Liu X*. (2015) Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies. Human Molecular Genetics 24(8):2125-2137. email: support@cravat.us name: Chengliang Dong organization: University of Southern California, Biostatistics Department website: https://academic.oup.com/hmg/article/24/8/2125/651446 groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-09-14T15:00:20.993477+0000 requires: null size: 3968963919 tags: - variant effect prediction - variants title: MetaSVM type: annotator versions: - 1.0.0 - 1.0.1 mirbase: code_size: 175884 commercial_warning: null data_size: 468996 data_sources: 1.0.0: v3.0 1.0.1: v3.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v3.0 description: A microRNA database is a searchable database of published miRNA sequences and annotation. developer: citation: 'Kozomara, Ana, and Sam Griffiths-Jones. "miRBase: annotating high confidence microRNAs using deep sequencing data." Nucleic acids research 42.D1 (2014): D68-D73' email: mirbase@manchester.ac.uk name: Faculty of Biology, Medicine, and Health, Uninversity of Manchester organization: Faculty of Biology, Medicine, and Health, Uninversity of Manchester website: http://www.mirbase.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-08-31T15:01:17.047131+0000 requires: - wgmirbase size: 644880 tags: - non coding title: miRBase type: annotator versions: - 1.0.0 - 1.0.1 mitomap: code_size: 90074 commercial_warning: null data_size: 292868 data_sources: 1.0.0: 2020.04.27 1.1.0: 2020.04.27 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: 2020.04.27 description: The MITOMAP database of human mitochondrial DNA (mtDNA) information has been an important compilation of mtDNA variation for researchers, clinicians and genetic counselors. developer: citation: Lott, et al., mtDNA variation and analysis using MITOMAP and MITOMASTER, Current Protocols in Bioinformatics 44:1.23.1-1.23.26 (December 2013). email: support@cravat.us name: '' organization: FOSWIKI website: https://mitomap.org/foswiki/bin/view/MITOMAP/WebHome groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-06-10T18:40:43.275081+0000 requires: - wgmitomap size: 382942 tags: - variant effect prediction - variants title: MITOMAP type: annotator versions: - 1.0.0 - 1.1.0 mupit: code_size: 287301 commercial_warning: null data_size: 5287936 data_sources: 1.0.0: null 4.1.0: null 4.2.1: null 4.2.2: null 4.2.3: v5.2.4 4.2.4: v5.2.4 4.2.5: v5.2.4 4.2.6: v5.2.4 data_versions: 1.0.0: 1.0.0 4.1.0: 1.0.0 4.2.1: 1.0.0 4.2.2: 4.2.2 4.2.3: 4.2.2 4.2.4: 4.2.2 4.2.5: 4.2.2 4.2.6: 4.2.2 datasource: v5.2.4 description: Provides links to variant position and annotations in 3D MuPIT structure viewer. developer: citation: 'Niknafs, N., Kim, D., Kim, R., et al. (2013). MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures. Human genetics, 132(11), 1235-1243.' email: '' name: Johns Hopkins - Karchin Lab organization: Johns Hopkins - Karchin Lab website: http://mupit.icm.jhu.edu/MuPIT_Interactive/ groups: [] has_logo: true hidden: false latest_version: 4.2.6 publish_time: 2019-01-30T18:42:26.597314+0000 requires: - wgmupit size: 5575237 tags: - variants - genes - denovo - cancer - variant effect prediction - protein visualization title: MuPIT type: annotator versions: - 1.0.0 - 4.1.0 - 4.2.1 - 4.2.2 - 4.2.3 - 4.2.4 - 4.2.5 - 4.2.6 mutation_assessor: code_size: 18756 commercial_warning: null data_size: 4283258884 data_sources: '3.0': null 3.0.01: null 3.0.02: Release 3 3.0.03: Release 3 3.0.4: Release 3 3.0.5: Release 3 3.0.6: Release 3 3.1.0: Release 3 3.1.1: Release 3 data_versions: '3.0': '3.0' 3.0.01: '3.0' 3.0.02: '3.0' 3.0.03: '3.0' 3.0.4: '3.0' 3.0.5: '3.0' 3.0.6: '3.0' 3.1.0: 3.1.0 3.1.1: 3.1.0 datasource: Release 3 description: Mutation Assessor is a database providing prediction of the functional impact of amino-acid substitutions in proteins developer: citation: Reva, B., Antipin, Y., & Sander, C. (2007). Determinants of protein function revealed by combinatorial entropy optimization. Genome biology, 8(11), R232. email: support@opencravat.org name: Chris Sander organization: Memorial Sloan-Kettering Cancer Center website: http://mutationassessor.org/r3/about.php groups: [] has_logo: true hidden: false latest_version: 3.1.1 publish_time: 2019-01-30T18:42:36.301616+0000 requires: - wgmutation_assessor size: 4283277640 tags: - variant effect prediction - variants title: Mutation Assessor type: annotator versions: - '3.0' - 3.0.01 - 3.0.02 - 3.0.03 - 3.0.4 - 3.0.5 - 3.0.6 - 3.1.0 - 3.1.1 mutpanning: code_size: 326312 commercial_warning: null data_size: 75780 data_sources: 1.0.0: v2.0 data_versions: 1.0.0: 1.0.0 datasource: v2.0 description: Discovers new tumor genes in aggregated sequencing data. developer: citation: 'Detlein, Felix, et al. "Identification of cancer driver genes based on nucleotide context." Nature Genetics 52.2 (2020): 208-218.' email: support@cravat.us name: Broad Institute organization: Broad Institute website: http://www.cancer-genes.org groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T19:06:43.062461+0000 requires: null size: 402092 tags: - genes - cancer title: Mutpanning type: annotator versions: - 1.0.0 mutpred1: code_size: 189044 commercial_warning: null data_size: 12137957380 data_sources: 1.2.0: null 1.2.1: null 1.2.2: null 1.2.3: v1 1.2.4: v1.2 1.2.5: v1.2 1.2.6: v1.2 1.3.0: v4.1 data_versions: 1.2.0: 1.2.0 1.2.1: 1.2.0 1.2.2: 1.2.0 1.2.3: 1.2.0 1.2.4: 1.2.0 1.2.5: 1.2.0 1.2.6: 1.2.0 1.3.0: 1.3.0 datasource: v4.1 description: MutPred is a random forest model for the prediction of pathogenic missense variants and automated inference of molecular mechanisms of disease. developer: citation: 'Li B, Krishnan VG, Mort ME, Xin F, Kamati KK, Cooper DN, Mooney SD, Radivojac P. Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinformatics (2009) 25(21): 2744-2750.' email: vpejaver@uw.edu name: Vikas Pejaver organization: University of Washington website: http://mutpred1.mutdb.org/ groups: [] has_logo: true hidden: false latest_version: 1.3.0 publish_time: 2020-10-29T20:22:01.193992+0000 requires: - wgmutpred1 size: 12138146424 tags: - variant effect prediction title: MutPred type: annotator versions: - 1.2.0 - 1.2.1 - 1.2.2 - 1.2.3 - 1.2.4 - 1.2.5 - 1.2.6 - 1.3.0 mutpred_indel: code_size: 404896 commercial_warning: null data_size: 17905113092 data_sources: 1.0.0: v1.0 1.1.0: v1.0 data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: v1.0 description: A web application developed to classify human non-frameshifting indels as pathogenic or benign. In addition, it predicts their impact on over 50 different protein properties and, thus, enables the inference of molecular mechanisms of pathogenicity. developer: citation: 'Pagel, Kymberleigh A., et al. "Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome." PLoS computational biology 15.6 (2019): e1007112.' email: support@cravat.us name: Kymberleigh Pagel organization: Indiana University website: http://mutpredindel.cs.indiana.edu/index.html groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2021-01-19T15:45:50.688799+0000 requires: null size: 17905517988 tags: - variant effect prediction - variants title: MutPred-Indel type: annotator versions: - 1.0.0 - 1.1.0 ncbigene: code_size: 358480 commercial_warning: null data_size: 71118848 data_sources: 2018.02.21: null 2018.02.211: null 2018.02.213: null 2019.02.006: null 2019.03.23: 2019.03.23 2019.05.13: 2019.03.23 2019.08.02: 2019.03.23 2022.08.30: 2022.08.30 2024.02.01: 2024.02.01 2024.03.01: 2024.03.01 data_versions: 2018.02.21: 2018.02.21 2018.02.211: 2018.02.21 2018.02.213: 2018.02.21 2019.02.006: 2019.02.006 2019.03.23: 2019.03.23 2019.05.13: 2019.03.23 2019.08.02: 2019.03.23 2022.08.30: 2022.08.30 2024.02.01: 2024.02.01 2024.03.01: 2024.03.01 datasource: 2024.03.01 description: Gene description from NIH's NCBI Gene Info developer: citation: Wheeler, D. L., Barrett, T., Benson, D. A., Bryant, S. H., et al. (2006). Database resources of the national center for biotechnology information. Nucleic acids research, 35(suppl_1), D5-D12. email: '' name: NIH organization: NIH website: https://www.ncbi.nlm.nih.gov/gene groups: [] has_logo: true hidden: false latest_version: 2024.03.01 publish_time: 2024-03-11T16:07:40.218692+0000 requires: - wgncbigene size: 71477328 tags: - genes - literature title: NCBI Gene type: annotator versions: - 2018.02.21 - 2018.02.211 - 2018.02.213 - 2019.02.006 - 2019.03.23 - 2019.05.13 - 2019.08.02 - 2022.08.30 - 2024.02.01 - 2024.03.01 ncer: code_size: 50990 commercial_warning: null data_size: 14529298432 data_sources: 1.0.0: v2 2022.09.22: 2022.09.22 data_versions: 1.0.0: 1.0.0 2022.09.22: 2022.09.22 datasource: 2022.09.22 description: ncER has a good performance for the identification of deleterious variants in the non-coding genome. ncER can also identify non-coding regions associated with cell viability, an in vitro surrogate of essentiality9, and with regulation of an essential gene. developer: citation: Wells, A., Heckerman, D., Torkamani, A. et al. Ranking of non-coding pathogenic variants and putative essential regions of the human genome. Nat Commun 10, 5241 (2019). https://doi.org/10.1038/s41467-019-13212-3 email: support@cravat.us name: '' organization: Department of Integrative Structural and Computational Biology, The Scripps Research Institute website: https://github.com/TelentiLab/ncER_datasets groups: [] has_logo: true hidden: false latest_version: 2022.09.22 publish_time: 2022-09-27T16:48:00.143889+0000 requires: null size: 14529349422 tags: - non coding title: 'ncER: non-coding essential regulation' type: annotator versions: - 1.0.0 - 2022.09.22 ncrna: code_size: 70673 commercial_warning: null data_size: 5773839 data_sources: 2014.1.10: null 2014.1.102: hg38 2019.02.006: hg38 2019.05.13: hg38 data_versions: 2014.1.10: 2014.1.10 2014.1.102: 2014.1.10 2019.02.006: 2014.1.10 2019.05.13: 2019.05.13 datasource: hg38 description: Non-coding RNA from RepeatMasker library developer: citation: Bao, W., Kojima, K. K., & Kohany, O. (2015). Repbase Update, a database of repetitive elements in eukaryotic genomes. Mobile DNA, 6(1), 11. email: '' name: Genetic Information Research Institute organization: Genetic Information Research Institute website: https://www.girinst.org/server/RepBase/index.php groups: [] has_logo: true hidden: false latest_version: 2019.05.13 publish_time: 2019-01-30T20:42:51.131258+0000 requires: null size: 5844512 tags: - noncoding - genomic features title: ncRNA IT type: annotator versions: - 2014.1.10 - 2014.1.102 - 2019.02.006 - 2019.05.13 ndex: code_size: 205130 commercial_warning: For commercial users, contact the source databases and purchase an appropriate license if necessary. Screen reader support enabled. data_size: 590848 data_sources: 4.0.0: null 4.0.10: v2 4.0.11: v2 4.0.2: null 4.0.3: v2 4.0.4: v2 4.0.5: v2 4.0.6: v2 4.0.7: v2 4.0.9: v2 data_versions: 4.0.0: 4.0.0 4.0.10: 4.0.0 4.0.11: 4.0.0 4.0.2: 4.0.0 4.0.3: 4.0.0 4.0.4: 4.0.0 4.0.5: 4.0.0 4.0.6: 4.0.0 4.0.7: 4.0.0 4.0.9: 4.0.0 datasource: v2 description: Network Data Exchange developer: citation: Pratt, D., Chen, J., Welker, D., et al. (2015). NDEx, the network data exchange. Cell systems, 1(4), 302-305. email: '' name: The Cytoscape Consortium organization: The Cytoscape Consortium website: http://home.ndexbio.org/index/ groups: - ndex_group has_logo: true hidden: false latest_version: 4.0.11 publish_time: 2019-01-30T01:56:40.452873+0000 requires: - wgndex - ndex_group - wgndexsummary size: 795978 tags: - genes - visualization title: NDEx NCI Cancer Pathways type: annotator versions: - 4.0.0 - 4.0.2 - 4.0.3 - 4.0.4 - 4.0.5 - 4.0.6 - 4.0.7 - 4.0.9 - 4.0.10 - 4.0.11 ndex_signor: code_size: 224172 commercial_warning: null data_size: 102400 data_sources: 1.0.0: v2 data_versions: 1.0.0: 1.0.0 datasource: v2 description: Network Data Exchange SIGNOR Pathways developer: citation: Pratt, D., Chen, J., Welker, D., et al. (2015). NDEx, the network data exchange. Cell systems, 1(4), 302-305. email: '' name: The Cytoscape Consortium organization: The Cytoscape Consortium website: http://home.ndexbio.org/index/ groups: - ndex_group has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-18T00:46:34.699489+0000 requires: - wgndex_signor - ndex_group size: 326572 tags: - variants - genes - cancer - interactions title: NDEx SIGNOR type: annotator versions: - 1.0.0 oldcravat-converter: code_size: 12411 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: File converter for old architecture cravat input developer: email: kmoad@insilico.us.com itation: '' name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.2 publish_time: '2019-01-07T22:43:03.000000' requires: null size: 12411 tags: null title: OldCravat Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 omim: code_size: 27840 commercial_warning: null data_size: 10360836 data_sources: 1.0.0: v4.1 1.1.0: v4.1 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 datasource: v4.1 description: Online Mendelian Inheritance in Man. Catalog of human genes and genetic disorders and traits. developer: citation: 'Amberger JS, Bocchini CA, Scott AF, Hamosh A. OMIM.org: leveraging knowledge across phenotype-gene relationships. Nucleic Acids Res. 2019 Jan 8;47(D1):D1038-D1043. doi:10.1093/nar/gky1151. PMID: 30445645.' email: support@cravat.us name: Johns Hopkins University organization: Johns Hopkins University website: https://omim.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-08-21T19:10:57.862193+0000 requires: null size: 10388676 tags: - variants - clinical relevance title: OMIM type: annotator versions: - 1.0.0 - 1.1.0 pharmgkb: code_size: 30016 commercial_warning: null data_size: 1560434 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: 1.0.0 1.1.0: 1.1.0 datasource: null description: Clinically actionable gene-drug associations and genotype-phenotype relationships developer: citation: 'M. Whirl-Carrillo, E.M. McDonagh, J. M. Hebert, L. Gong, K. Sangkuhl, C.F. Thorn, R.B. Altman and T.E. Klein. "Pharmacogenomics Knowledge for Personalized Medicine" Clinical Pharmacology & Therapeutics (2012) 92(4): 414-417' email: feedback@pharmgkb.org name: Teri E. Klein organization: Shriram Center for Bioengineering and Chemical Engineering website: https://www.pharmgkb.org/ groups: [] has_logo: true hidden: false latest_version: 1.1.0 publish_time: 2020-08-21T19:11:49.283863+0000 requires: - wgpharmgkb size: 1590450 tags: - variants - clinical relevance - cancer - cardiovascular - literature title: PharmGKB type: annotator versions: - 1.0.0 - 1.1.0 phastcons: code_size: 132005 commercial_warning: null data_size: 5986715652 data_sources: 3.5.0: null 3.5.01: null 3.5.02: dbNSFP v4.0b1 3.5.03: dbNSFP v4.0b1 3.5.04: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 3.5.9: dbNSFP v4.0b1 3.6.0: dbNSFP v4.5a data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.04 3.5.5: 3.5.04 3.5.6: 3.5.04 3.5.7: 3.5.04 3.5.8: 3.5.04 3.5.9: 3.5.04 3.6.0: 3.6.0 datasource: dbNSFP v4.5a description: A database of compressed phastCons conservation scores. developer: citation: Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R., & Siepel, A. (2010). Detection of nonneutral substitution rates on mammalian phylogenies. Genome research, 20(1), 110-121. email: support@cravat.us name: UCSC organization: University of California Santa Cruz Genomics Institute website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 3.6.0 publish_time: 2024-03-25T13:34:10.549214+0000 requires: - wgphastcons>=1.2.0 size: 5986847657 tags: - variants - evolution title: Phast Cons type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.5 - 3.5.6 - 3.5.7 - 3.5.8 - 3.5.9 - 3.6.0 phdsnpg: code_size: 20128 commercial_warning: null data_size: 5253156864 data_sources: 0.0.2: null 0.0.4: null 0.0.5: dbNSFP v4.0b1 0.0.6: dbNSFP v4.0b1 0.0.7: dbNSFP v4.0b1 0.0.8: dbNSFP v4.0b1 0.0.9: dbNSFP v4.0b1 data_versions: 0.0.2: 0.0.2 0.0.4: 0.0.2 0.0.5: 0.0.2 0.0.6: 0.0.2 0.0.7: 0.0.2 0.0.8: 0.0.2 0.0.9: 0.0.2 datasource: dbNSFP v4.0b1 description: A binary classifier for predicting pathogenic variants in coding and non-coding regions. developer: citation: 'Capriotti, E., & Fariselli, P. (2017). PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide variants. Nucleic acids research, 45(W1), W247-W252.' email: emidio.capriotti@unibo.it name: Emidio Capriotti organization: University of Bologna website: http://snps.biofold.org/phd-snpg/index.html groups: [] has_logo: true hidden: false latest_version: 0.0.9 publish_time: 2019-01-30T18:44:04.627754+0000 requires: - wgphdsnpg size: 5253176992 tags: - variant effect prediction - variants title: PhD-SNPg type: annotator versions: - 0.0.2 - 0.0.4 - 0.0.5 - 0.0.6 - 0.0.7 - 0.0.8 - 0.0.9 phi: code_size: 23648 commercial_warning: null data_size: 630784 data_sources: 3.5.0: 3.5.0 3.5.1: dbNSFP v4.0b1 3.5.2: dbNSFP v4.0b1 3.5.3: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: 3.5.0 3.5.3: 3.5.0 3.5.4: 3.5.0 datasource: dbNSFP v4.0b1 description: Providing probabilities for gene-based haploinsufficiency developer: citation: Huang, N., Lee, I., Marcotte, E. M., & Hurles, M. E. (2010). Characterising and predicting haploinsufficiency in the human genome. PLoS genetics, 6(10), e1001154. email: support@cravat.us name: Ni Huang, Insuk Lee, Edward M. Marcotte, Matthew E. Hurles organization: Wellcome Trust Sanger Institute website: https://doi.org/10.1371/journal.pgen.1001154 groups: [] has_logo: true hidden: false latest_version: 3.5.4 publish_time: 2019-01-30T18:44:14.269915+0000 requires: - wgphi size: 654432 tags: - genes title: p(HI) type: annotator versions: - 3.5.0 - 3.5.1 - 3.5.2 - 3.5.3 - 3.5.4 phylop: code_size: 247624 commercial_warning: null data_size: 6421039108 data_sources: 3.5.0: null 3.5.01: null 3.5.02: null 3.5.03: hg38 3.5.04: hg38 3.5.05: hg38 3.5.10: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 3.5.9: dbNSFP v4.0b1 3.6.0: dbNSFP v4.5a data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.0 3.5.05: 3.5.05 3.5.10: 3.5.05 3.5.6: 3.5.05 3.5.7: 3.5.05 3.5.8: 3.5.05 3.5.9: 3.5.05 3.6.0: 3.6.0 datasource: dbNSFP v4.5a description: A database providing conservation scoring by phylogenetic p-values developer: citation: Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R., & Siepel, A. (2010). Detection of nonneutral substitution rates on mammalian phylogenies. Genome research, 20(1), 110-121. email: support@cravat.us name: UCSC organization: University of California Santa Cruz Genomics Institute website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 3.6.0 publish_time: 2024-03-25T13:13:29.663866+0000 requires: - wgphylop>=1.2.0 size: 6421286732 tags: - variants - evolution title: PhyloP type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.05 - 3.5.6 - 3.5.7 - 3.5.8 - 3.5.9 - 3.5.10 - 3.6.0 polyphen2: code_size: 25378 commercial_warning: Freely available for non-commercial use. data_size: 6057283584 data_sources: 1.0.0: '2' data_versions: 1.0.0: 1.0.0 datasource: '2' description: PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations developer: citation: Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. Nat Methods 7(4):248-249 (2010). email: iadzhubey@rics.bwh.harvard.edu name: Ivan A Adzhubei organization: Brigham and Women's Hospital website: http://genetics.bwh.harvard.edu/pph2/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-11-10T20:40:26.274775+0000 requires: null size: 6057308962 tags: - variant effect prediction title: PolyPhen-2 type: annotator versions: - 1.0.0 prec: code_size: 28067 commercial_warning: null data_size: 532480 data_sources: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: dbNSFP v4.0b1 3.5.3: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 3.5.6: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: 3.5.0 3.5.3: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 3.5.6: 3.5.0 3.5.7: 3.5.0 datasource: dbNSFP v4.0b1 description: Providing probabilities for LoF alleles developer: citation: MacArthur, D. G., Balasubramanian, S., Frankish, A., et al. (2012). A systematic survey of loss-of-function variants in human protein-coding genes. Science, 335(6070), 823-828. email: support@cravat.us name: Daniel G. MacArthur organization: Wellcome Trust Sanger Institute website: https://doi.org/10.1126/science.1215040 groups: [] has_logo: true hidden: false latest_version: 3.5.7 publish_time: '2019-01-28T21:42:44.000000' requires: - wgprec size: 560547 tags: - genes title: P(rec) type: annotator versions: - 3.5.0 - 3.5.1 - 3.5.2 - 3.5.3 - 3.5.4 - 3.5.5 - 3.5.6 - 3.5.7 pseudogene: code_size: 46518 commercial_warning: null data_size: 3086336 data_sources: 1.0.0: null 27.0.0: null 27.0.1: null 27.0.2: null 27.0.3: null 27.0.4: hg38 27.0.5: hg38 27.0.6: hg38 data_versions: 1.0.0: 1.0.0 27.0.0: 1.0.0 27.0.1: 1.0.0 27.0.2: 1.0.0 27.0.3: 1.0.0 27.0.4: 1.0.0 27.0.5: 1.0.0 27.0.6: 1.0.0 datasource: hg38 description: Pseudogenes from UCSC hg38 wgEncodeGencodePseudoGeneV27 developer: citation: 'Harrow, J., Frankish, A., Gonzalez, J. M., Tapanari, E., Diekhans, M., Kokocinski, F., ... & Barnes, I. (2012). GENCODE: the reference human genome annotation for The ENCODE Project. Genome research, 22(9), 1760-1774.' email: '' name: UCSC organization: UCSC website: https://www.gencodegenes.org/ groups: [] has_logo: true hidden: false latest_version: 27.0.6 publish_time: 2019-01-30T18:44:48.081851+0000 requires: null size: 3132854 tags: - genomic features title: Pseudogene type: annotator versions: - 1.0.0 - 27.0.0 - 27.0.1 - 27.0.2 - 27.0.3 - 27.0.4 - 27.0.5 - 27.0.6 pubmed: code_size: 47739 commercial_warning: null data_size: 933888 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 1.1.1: 1.0.0 1.1.2: 1.0.0 1.1.3: 1.0.0 1.1.4: 1.0.0 1.1.5: 1.0.0 datasource: null description: PubMed articles related to a particular gene developer: citation: '' email: pubmedcentral@ncbi.nlm.nih.gov name: NCBI organization: NCBI website: https://www.ncbi.nlm.nih.gov/pubmed groups: [] has_logo: true hidden: false latest_version: 1.1.5 publish_time: '2018-09-27T17:48:28.000000' requires: null size: 981627 tags: - literature title: PubMed type: annotator versions: - 1.0.0 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 regulomedb: code_size: 90311 commercial_warning: null data_size: 1067202564 data_sources: 1.0.0: v2.0 1.0.1: v2.0 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: v2.0 description: Identifies DNA features and regulatory elements in non-coding regions of the human genome. developer: citation: 'Boyle AP, Hong EL, Hariharan M, Cheng Y, Schaub MA, Kasowski M, Karczewski KJ, Park J, Hitz BC, Weng S, Cherry JM, Snyder M. Annotation of functional variation in personal genomes usingRegulomeDB. Genome Research 2012, 22(9):1790-1797. PMID: 22955989.' email: support@cravat.us name: '' organization: Stanford University website: https://www.regulomedb.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2021-03-31T15:14:10.837161+0000 requires: null size: 1067292875 tags: - non coding title: RegulomeDB type: annotator versions: - 1.0.0 - 1.0.1 repeat: code_size: 69574 commercial_warning: null data_size: 366328832 data_sources: 2014.1.10: null 2014.1.101: null 2014.1.102: null 2014.1.104: hg38 2019.05.13: hg38 2019.08.02: hg38 2019.08.22: hg38 2019.2.060: hg38 2020.10.16: hg38 data_versions: 2014.1.10: 2014.1.10 2014.1.101: 2014.1.10 2014.1.102: 2014.1.10 2014.1.104: 2014.1.10 2019.05.13: 2014.1.10 2019.08.02: 2014.1.10 2019.08.22: 2014.1.10 2019.2.060: 2014.1.10 2020.10.16: 2014.1.10 datasource: hg38 description: Repeating elements from RepeatMasker and Simple Repeat tracks of UCSC hg38 database. UCSC Genome Browser Tracks rmsk and simpleRepeat were used to obtain Low complexity, SINE, LINE, LTR, Simple Repeat, and Satellite data and they were combined. developer: citation: 'Haeussler, M., Zweig, A. S., Tyner, C., et al. (2018). The UCSC Genome Browser database: 2019 update. Nucleic acids research, 47(D1), D853-D858.' email: '' name: null organization: UCSC website: http://genome.ucsc.edu groups: [] has_logo: true hidden: false latest_version: 2020.10.16 publish_time: 2019-01-30T18:45:06.202135+0000 requires: null size: 366398406 tags: - non coding title: Repeat Sequences type: annotator versions: - 2014.1.10 - 2014.1.101 - 2014.1.102 - 2014.1.104 - 2019.2.060 - 2019.05.13 - 2019.08.02 - 2019.08.22 - 2020.10.16 revel: code_size: 210866 commercial_warning: For commercial use, contact xmliu.uth@gmail.com data_size: 2998312960 data_sources: 2016.06.03: 2016.06.03 2016.06.04: 2016.06.03 2019.02.06: 2016.06.03 2019.03.20: 2016.06.03 2019.03.27: 2019.03.27 2019.05.13: '2017-06-21' data_versions: 2016.06.03: 2016.06.03 2016.06.04: 2016.06.03 2019.02.06: 2016.06.03 2019.03.20: 2016.06.03 2019.03.27: 2019.03.27 2019.05.13: 2019.03.27 datasource: '2017-06-21' description: Rare Exome Variant Ensemble Learner developer: citation: 'Ioannidis, N. M., Rothstein, J. H., Pejaver, V., et al. (2016). REVEL: an ensemble method for predicting the pathogenicity of rare missense variants. The American Journal of Human Genetics, 99(4), 877-885.' email: joseph.rothstein@mssm.edu name: Joe Rothstein organization: Icahn School of Medicine at Mount Sinai website: https://sites.google.com/site/revelgenomics/ groups: [] has_logo: true hidden: false latest_version: 2019.05.13 publish_time: 2020-08-21T19:20:19.348073+0000 requires: - wgrevel size: 2998523826 tags: - variant effect prediction title: REVEL type: annotator versions: - 2016.06.03 - 2016.06.04 - 2019.02.06 - 2019.03.20 - 2019.03.27 - 2019.05.13 rvis: code_size: 22269 commercial_warning: null data_size: 1282048 data_sources: 3.0.0: null 3.0.01: null 3.0.02: null 3.0.03: null 3.0.04: v3 3.0.05: v3 3.0.6: v3 3.0.7: v3 3.0.8: v3 data_versions: 3.0.0: 3.0.0 3.0.01: 3.0.0 3.0.02: 3.0.0 3.0.03: 3.0.0 3.0.04: 3.0.0 3.0.05: 3.0.0 3.0.6: 3.0.0 3.0.7: 3.0.0 3.0.8: 3.0.0 datasource: v3 description: Residual variation intolerance scoring developer: citation: Petrovski, S., Wang, Q., Heinzen, E. L., Allen, A. S., & Goldstein, D. B. (2013). Genic intolerance to functional variation and the interpretation of personal genomes. PLoS genetics, 9(8), e1003709. email: support@cravat.us name: "Slav\xE9 Petrovski, Quanli Wang, Erin L. Heinzen, Andrew S. Allen, David\ \ B. Goldstein" organization: Center for Human Genome Variation, Duke University website: https://doi.org/10.1371/journal.pgen.1003709 groups: [] has_logo: true hidden: false latest_version: 3.0.8 publish_time: 2019-01-30T18:45:23.421954+0000 requires: - wgrvis size: 1304317 tags: - genes title: RVIS type: annotator versions: - 3.0.0 - 3.0.01 - 3.0.02 - 3.0.03 - 3.0.04 - 3.0.05 - 3.0.6 - 3.0.7 - 3.0.8 segway: code_size: 164238 commercial_warning: null data_size: 8093696 data_sources: 1.0.0: null 1.2.0: null 1.2.1: null data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 1.2.1: 1.0.0 datasource: null description: Chromatin state activity scores developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.1 publish_time: 2020-09-12T20:08:49.525614+0000 requires: - segway_group size: 8257934 tags: - variants - non coding title: Segway type: annotator versions: - 1.0.0 - 1.2.0 - 1.2.1 segway_adrenal: code_size: 11669 commercial_warning: null data_size: 318869504 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Adrenal tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:09:37.106540+0000 requires: - segway_group size: 318881173 tags: - non coding title: Segway Adrenal type: annotator versions: - 1.0.0 - 1.2.0 segway_blood: code_size: 18175 commercial_warning: null data_size: 10196074496 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Blood tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:10:24.447585+0000 requires: - segway_group size: 10196092671 tags: - non coding title: Segway Blood type: annotator versions: - 1.0.0 - 1.2.0 segway_brain: code_size: 20613 commercial_warning: null data_size: 4480552960 data_sources: 1.0.0: 2019.09.01 1.1.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.1.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Brain tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:11:11.639143+0000 requires: - segway_group size: 4480573573 tags: - non coding title: Segway Brain type: annotator versions: - 1.0.0 - 1.1.0 - 1.2.0 segway_breast: code_size: 11957 commercial_warning: null data_size: 691527680 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Breast tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:11:58.740914+0000 requires: - segway_group size: 691539637 tags: - non coding title: Segway Breast type: annotator versions: - 1.0.0 - 1.2.0 segway_esc: code_size: 12787 commercial_warning: null data_size: 1872506880 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Esc tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:12:46.087067+0000 requires: - segway_group size: 1872519667 tags: - non coding title: Segway Esc type: annotator versions: - 1.0.0 - 1.2.0 segway_esc_derived: code_size: 14605 commercial_warning: null data_size: 5715992576 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Esc Derived tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:13:33.407910+0000 requires: - segway_group size: 5716007181 tags: - non coding title: Segway Esc Derived type: annotator versions: - 1.0.0 - 1.2.0 segway_fat: code_size: 12045 commercial_warning: null data_size: 1032069120 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Fat tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:14:20.790696+0000 requires: - segway_group size: 1032081165 tags: - non coding title: Segway Fat type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_colon: code_size: 12223 commercial_warning: null data_size: 1098141696 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Colon tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:15:08.176627+0000 requires: - segway_group size: 1098153919 tags: - non coding title: Segway GI Colon type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_duodenum: code_size: 11974 commercial_warning: null data_size: 908914688 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Duodenum tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:15:55.361222+0000 requires: - segway_group size: 908926662 tags: - non coding title: Segway GI Duodenum type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_intestine: code_size: 11988 commercial_warning: null data_size: 777023488 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Intestine tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:16:42.646577+0000 requires: - segway_group size: 777035476 tags: - non coding title: Segway GI Intestine type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_rectum: code_size: 12287 commercial_warning: null data_size: 1451003904 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Rectum tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:17:30.113048+0000 requires: - segway_group size: 1451016191 tags: - non coding title: Segway GI Rectum type: annotator versions: - 1.0.0 - 1.2.0 segway_gi_stomach: code_size: 12493 commercial_warning: null data_size: 1518788608 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for GI Stomach tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:18:17.380751+0000 requires: - segway_group size: 1518801101 tags: - non coding title: Segway GI Stomach type: annotator versions: - 1.0.0 - 1.2.0 segway_heart: code_size: 12473 commercial_warning: null data_size: 1492787200 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Heart tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:19:05.928121+0000 requires: - segway_group size: 1492799673 tags: - non coding title: Segway Heart type: annotator versions: - 1.0.0 - 1.2.0 segway_ipsc: code_size: 12807 commercial_warning: null data_size: 2085855232 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Ipsc tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:19:53.460029+0000 requires: - segway_group size: 2085868039 tags: - non coding title: Segway Ipsc type: annotator versions: - 1.0.0 - 1.2.0 segway_kidney: code_size: 11649 commercial_warning: null data_size: 493993984 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Kidney tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:20:40.781153+0000 requires: - segway_group size: 494005633 tags: - non coding title: Segway Kidney type: annotator versions: - 1.0.0 - 1.2.0 segway_liver: code_size: 11637 commercial_warning: null data_size: 367927296 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Liver tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:21:27.900970+0000 requires: - segway_group size: 367938933 tags: - non coding title: Segway Liver type: annotator versions: - 1.0.0 - 1.2.0 segway_lung: code_size: 11633 commercial_warning: null data_size: 368173056 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Lung tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:22:15.165440+0000 requires: - segway_group size: 368184689 tags: - non coding title: Segway Lung type: annotator versions: - 1.0.0 - 1.2.0 segway_muscle: code_size: 12269 commercial_warning: null data_size: 1135779840 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Muscle tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:23:02.628756+0000 requires: - segway_group size: 1135792109 tags: - non coding title: Segway Muscle type: annotator versions: - 1.0.0 - 1.2.0 segway_muscle_leg: code_size: 11672 commercial_warning: null data_size: 297504768 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Muscle Leg tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:23:50.095197+0000 requires: - segway_group size: 297516440 tags: - non coding title: Segway Muscle Leg type: annotator versions: - 1.0.0 - 1.2.0 segway_ovary: code_size: 11621 commercial_warning: null data_size: 342245376 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Ovary tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:24:37.436427+0000 requires: - segway_group size: 342256997 tags: - non coding title: Segway Ovary type: annotator versions: - 1.0.0 - 1.2.0 segway_placenta: code_size: 11942 commercial_warning: null data_size: 822734848 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Placenta tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:25:24.640069+0000 requires: - segway_group size: 822746790 tags: - non coding title: Segway Placenta type: annotator versions: - 1.0.0 - 1.2.0 segway_skin: code_size: 13638 commercial_warning: null data_size: 2971197440 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Skin tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:26:12.111781+0000 requires: - segway_group size: 2971211078 tags: - non coding title: Segway Skin type: annotator versions: - 1.0.0 - 1.2.0 segway_stromal_connective: code_size: 12289 commercial_warning: null data_size: 1325142016 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Stromal Connective tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:27:00.004560+0000 requires: - segway_group size: 1325154305 tags: - non coding title: Segway Stromal Connective type: annotator versions: - 1.0.0 - 1.2.0 segway_thymus: code_size: 11905 commercial_warning: null data_size: 714776576 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Thymus tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:27:47.185959+0000 requires: - segway_group size: 714788481 tags: - non coding title: Segway Thymus type: annotator versions: - 1.0.0 - 1.2.0 segway_vascular: code_size: 11633 commercial_warning: null data_size: 296783872 data_sources: 1.0.0: 2019.09.01 1.2.0: 2019.09.01 data_versions: 1.0.0: 1.0.0 1.2.0: 1.0.0 datasource: 2019.09.01 description: Chromatin state for Vascular tissues developer: citation: 'Libbrecht, Maxwell W., et al. "A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types." Genome Biology 20.1 (2019): 1-14.' email: michael.hoffman@utoronto.ca name: Michael Hoffman organization: Princess Margaret Cancer Centre website: https://segway.hoffmanlab.org/ groups: - segway_group has_logo: true hidden: false latest_version: 1.2.0 publish_time: 2020-09-12T20:28:34.447763+0000 requires: - segway_group size: 296795505 tags: - non coding title: Segway Vascular type: annotator versions: - 1.0.0 - 1.2.0 sift: code_size: 19619 commercial_warning: Freely available to the academic community. Commercial licensees should contact Steven Henikoff. data_size: 14824480768 data_sources: 1.0.0: SIFT4G 2016-02-22 data_versions: 1.0.0: 1.0.0 datasource: SIFT4G 2016-02-22 description: SIFT predicts whether an amino acid substitution affects protein function developer: citation: 'Vaser R, Adusumalli S, Leng SN, Sikic M, Ng PC (2016) SIFT missense predictions for genomes. Nat Protocols 11: 1-9.' email: ngpc4@gis.a-star.edu.sg name: Pauline Ng organization: Bioinformatics Institute, Agency for Science, Technology and Research, Singapore website: sift.bii.a-star.edu.sg groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-11-10T20:41:21.626925+0000 requires: null size: 14824500387 tags: - variant effect prediction title: SIFT type: annotator versions: - 1.0.0 siphy: code_size: 45812 commercial_warning: null data_size: 5569429504 data_sources: 3.5.0: 3.5.0 3.5.1: dbNSFP v4.0b1 3.5.2: dbNSFP v4.0b1 3.5.3: dbNSFP v4.0b1 3.5.4: dbNSFP v4.0b1 3.5.5: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.1: 3.5.0 3.5.2: 3.5.0 3.5.3: 3.5.0 3.5.4: 3.5.0 3.5.5: 3.5.0 datasource: dbNSFP v4.0b1 description: A database of conservation scores based on 29 mammal genomes developer: citation: Lindblad-Toh, K., Garber, M., Zuk, et al. (2011). A high-resolution map of human evolutionary constraint using 29 mammals. Nature, 478(7370), 476. email: support@cravat.us name: '' organization: Broad Institute website: https://www.broadinstitute.org/mammals-models/29-mammals-project groups: [] has_logo: true hidden: false latest_version: 3.5.5 publish_time: 2019-01-30T18:45:33.527748+0000 requires: - wgsiphy size: 5569475316 tags: - variants - evolution title: SiPhy type: annotator versions: - 3.5.0 - 3.5.1 - 3.5.2 - 3.5.3 - 3.5.4 - 3.5.5 spliceai: code_size: 204339 commercial_warning: Freely available for non-commercial use. data_size: 1808545796 data_sources: 1.0.0: v4.0 data_versions: 1.0.0: 1.0.0 datasource: v4.0 description: A deep neural network that accurately predicts splice junctions from an arbitrary pre-mRNA transcript sequence, enabling precise prediction of noncoding genetic variants that cause cryptic splicing. developer: citation: 'Jaganathan, Kishore, et al. "Predicting splicing from primary sequence with deep learning." Cell 176.3 (2019): 535-548.' email: support@cravat.us name: illumina organization: illumina website: https://sites.google.com/site/jpopgen/dbNSFP groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-06-22T17:54:08.599658+0000 requires: null size: 1808750135 tags: - variant effect prediction - variants title: SpliceAI type: annotator versions: - 1.0.0 swissprot_ptm: code_size: 412924 commercial_warning: null data_size: 2189316 data_sources: 1.0.0: 2018.04.10 1.0.1: 2018.04.10 data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 datasource: 2018.04.10 description: A high quality manually annotated protein sequence database, specifying in post-translational modifications (PTMs). developer: citation: 'Khoury, George A., Richard C. Baliban, and Christodoulos A. Floudas. "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database." Scientific reports 1 (2011): 90.' email: support@cravat.us name: The UniProt Consortium organization: The UniProt Consortium website: https://www.uniprot.org/help/mod_res groups: [] has_logo: true hidden: false latest_version: 1.0.1 publish_time: 2020-09-16T14:25:49.598159+0000 requires: - wgswissprot_ptm size: 2602240 tags: - functional studies title: Swiss-Prot PTM type: annotator versions: - 1.0.0 - 1.0.1 tagsampler: code_size: 2912 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.11: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.0.8: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.0.10: null 1.0.11: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.0.8: null 1.1.0: null 1.1.1: null datasource: null description: Aggregates tags and samples developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.1 publish_time: '2018-07-24T19:44:47.000000' requires: null size: 2912 tags: null title: Tag Sampler type: postaggregator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.0.8 - 1.0.10 - 1.0.11 - 1.1.0 - 1.1.1 target: code_size: 29250 commercial_warning: null data_size: 20480 data_sources: 1.0.0: null 3.0.0: null 3.0.1: null 3.0.11: 3.0.1 3.0.12: 3.0.1 3.0.13: v3.0.1 3.0.14: v3.0.1 3.0.15: v3.0.1 3.0.16: v3.0.1 3.0.17: v3.0.1 data_versions: 1.0.0: 1.0.0 3.0.0: 1.0.0 3.0.1: 1.0.0 3.0.11: 1.0.0 3.0.12: 1.0.0 3.0.13: 1.0.0 3.0.14: 1.0.0 3.0.15: 1.0.0 3.0.16: 1.0.0 3.0.17: 1.0.0 datasource: v3.0.1 description: Tumor Alterations Relevant for GEnomics-driven Therapy developer: citation: Van Allen, E. M., Wagle, N., Stojanov, P., et al. (2014). Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. Nature medicine, 20(6), 682. email: support@cravat.us name: Broad Institute organization: Broad Institute website: https://software.broadinstitute.org/cancer/cga/target groups: [] has_logo: true hidden: false latest_version: 3.0.17 publish_time: 2019-01-30T18:45:59.292148+0000 requires: - wgtarget size: 49730 tags: - genes - clinical relevance - cancer title: TARGET type: annotator versions: - 1.0.0 - 3.0.0 - 3.0.1 - 3.0.11 - 3.0.12 - 3.0.13 - 3.0.14 - 3.0.15 - 3.0.16 - 3.0.17 textreporter: code_size: 8666 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Text format reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.2 publish_time: '2018-08-14T15:06:06.000000' requires: null size: 8666 tags: null title: Text Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 thousandgenomes: code_size: 418687 commercial_warning: null data_size: 5291798528 data_sources: 1.0.0: null 3.0.0: null 3.0.1: null 3.0.2: null 3.0.3: null 3.0.4: Phase 3 3.0.5: Phase 3 3.1.0: Phase 3 4.0.1: Phase 3 4.0.2: Phase 3 4.0.4: Phase 3 4.0.5: Phase 3 4.1.0: Phase 3 data_versions: 1.0.0: 1.0.0 3.0.0: 1.0.0 3.0.1: 1.0.0 3.0.2: 1.0.0 3.0.3: 1.0.0 3.0.4: 1.0.0 3.0.5: 1.0.0 3.1.0: 3.1.0 4.0.1: 3.1.0 4.0.2: 4.0.2 4.0.4: 4.0.2 4.0.5: 4.0.2 4.1.0: 4.0.2 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.0 publish_time: 2019-01-30T18:46:33.377326+0000 requires: - wgthousandgenomes - thousandgenomes_group size: 5292217215 tags: - allele frequency title: 1000 Genomes type: annotator versions: - 1.0.0 - 3.0.0 - 3.0.1 - 3.0.2 - 3.0.3 - 3.0.4 - 3.0.5 - 3.1.0 - 4.0.1 - 4.0.2 - 4.0.4 - 4.0.5 - 4.1.0 thousandgenomes_ad_mixed_american: code_size: 513507 commercial_warning: null data_size: 4097593344 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T18:59:59.557670+0000 requires: - thousandgenomes_group - wgthousandgenomes_ad_mixed_american size: 4098106851 tags: - allele frequency title: 1000 Genomes-Ad Mixed American type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 thousandgenomes_african: code_size: 418607 commercial_warning: null data_size: 5269155840 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 3.1.4: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 3.1.4: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:00:17.976738+0000 requires: - thousandgenomes_group - wgthousandgenomes_african size: 5269574447 tags: - allele frequency title: 1000 Genomes-African type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 3.1.4 - 4.1.0 - 4.1.1 thousandgenomes_east_asian: code_size: 418145 commercial_warning: null data_size: 4120207360 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:00:35.927973+0000 requires: - thousandgenomes_group - wgthousandgenomes_east_asian size: 4120625505 tags: - allele frequency title: 1000 Genomes-East Asian type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 thousandgenomes_european: code_size: 418125 commercial_warning: null data_size: 4173643776 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:00:53.753998+0000 requires: - thousandgenomes_group - wgthousandgenomes_european size: 4174061901 tags: - allele frequency title: 1000 Genomes-European type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 thousandgenomes_south_asian: code_size: 418090 commercial_warning: null data_size: 4243808256 data_sources: 3.1.0: Phase 3 3.1.1: Phase 3 3.1.3: Phase 3 4.1.0: Phase 3 4.1.1: Phase 3 data_versions: 3.1.0: 3.1.0 3.1.1: 3.1.1 3.1.3: 3.1.1 4.1.0: 3.1.1 4.1.1: 3.1.1 datasource: Phase 3 description: Population allele frequencies from 1000 Genomes Project developer: citation: 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature, 526(7571), 68. email: support@cravat.us name: 1000 Genomes Project Consortium organization: 1000 Genomes Project Consortium website: http://www.internationalgenome.org/home groups: - thousandgenomes_group has_logo: true hidden: false latest_version: 4.1.1 publish_time: 2019-06-07T19:15:43.009947+0000 requires: - thousandgenomes_group - wgthousandgenomes_south_asian size: 4244226346 tags: - allele frequency title: 1000 Genomes-South Asian type: annotator versions: - 3.1.0 - 3.1.1 - 3.1.3 - 4.1.0 - 4.1.1 trinity: code_size: 115052 commercial_warning: null data_size: 59396 data_sources: 1.0.0: 26 February 2020 data_versions: 1.0.0: 1.0.0 datasource: 26 February 2020 description: Trinity assembles transcript sequences from Illumina RNA-Seq data. developer: citation: 'Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883. PubMed PMID: 21572440.' email: support@cravat.us name: Broad Institute organization: Broad Institute website: https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/MUTATION_LIB_SUPPLEMENT/rna_editing/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2020-08-21T19:26:15.735084+0000 requires: null size: 174448 tags: - non coding title: Trinity CTAT type: annotator versions: - 1.0.0 tsvreporter: code_size: 14286 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Tab-delimited format text file reporter developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.2 publish_time: 2019-06-12T17:11:00.368964+0000 requires: null size: 14286 tags: null title: TSV Reporter type: reporter versions: - 1.0.0 - 1.0.1 - 1.0.2 ucscgenomebrowser: code_size: 1718 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: Link to UCSC Genome Browser developer: citation: ' UCSC Genome Browser: Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. The human genome browser at UCSC. Genome Res. 2002 Jun;12(6):996-1006.' email: support@opencravat.org name: UCSC organization: UCSC website: https://genome.ucsc.edu/ groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2023-08-03T17:58:31.667838+0000 requires: null size: 1718 tags: null title: UCSC Genome Browser type: annotator versions: - 1.0.0 - 1.1.0 uk10k_cohort: code_size: 57635 commercial_warning: null data_size: 16308228 data_sources: 3.5.0: null 3.5.01: null 3.5.02: null 3.5.03: null 3.5.04: dbNSFP v4.0b1 3.5.05: dbNSFP v4.0b1 3.5.06: dbNSFP v4.0b1 3.5.7: dbNSFP v4.0b1 3.5.8: dbNSFP v4.0b1 3.5.9: dbNSFP v4.0b1 data_versions: 3.5.0: 3.5.0 3.5.01: 3.5.0 3.5.02: 3.5.0 3.5.03: 3.5.0 3.5.04: 3.5.0 3.5.05: 3.5.0 3.5.06: 3.5.06 3.5.7: 3.5.06 3.5.8: 3.5.06 3.5.9: 3.5.06 datasource: dbNSFP v4.0b1 description: UK10K cohort provides genetic information from DTR & ALSPAC developer: citation: UK10K consortium. (2015). The UK10K project identifies rare variants in health and disease. Nature, 526(7571), 82. email: support@cravat.us name: UK10K Consortium organization: Wellcome Sanger Institute website: https://www.uk10k.org/studies/cohorts.html groups: [] has_logo: true hidden: false latest_version: 3.5.9 publish_time: 2019-01-30T18:46:41.583710+0000 requires: - wguk10k_cohort size: 16365863 tags: - allele frequency title: UK10k Cohorts type: annotator versions: - 3.5.0 - 3.5.01 - 3.5.02 - 3.5.03 - 3.5.04 - 3.5.05 - 3.5.06 - 3.5.7 - 3.5.8 - 3.5.9 uniprot: code_size: 25279 commercial_warning: null data_size: 692224 data_sources: 2018.9.0: 4.0.0 2018.9.1: 201809 2019.02.011: 201809 2019.02.06: 201809 2019.02.13: 201809 data_versions: 2018.9.0: 2018.9.0 2018.9.1: 2018.9.0 2019.02.011: 2018.9.0 2019.02.06: 2018.9.0 2019.02.13: 2018.9.0 datasource: 201809 description: Comprehensive resource for protein sequence and functional information. developer: citation: 'UniProt Consortium. (2018). UniProt: the universal protein knowledgebase. Nucleic acids research, 46(5), 2699.' email: support@cravat.us name: The UniProt Consortium organization: The UniProt Consortium website: https://www.uniprot.org/ groups: [] has_logo: true hidden: false latest_version: 2019.02.13 publish_time: 2019-01-30T18:46:50.778741+0000 requires: null size: 717503 tags: null title: UniProt type: annotator versions: - 2018.9.0 - 2018.9.1 - 2019.02.06 - 2019.02.011 - 2019.02.13 uniprot_domain: code_size: 6192 commercial_warning: null data_size: 7157414 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Protein domains from UniProt developer: citation: "The UniProt Consortium , UniProt: the Universal Protein Knowledgebase\ \ in 2023, Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023, Pages\ \ D523\u2013D531, https://doi.org/10.1093/nar/gkac1052" email: support@opencravat.org name: UniProt organization: EMBL-EBI website: https://www.uniprot.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2024-03-06T14:56:00.411841+0000 requires: null size: 7163606 tags: - literature - variants title: Uniprot Domain type: annotator versions: - 1.0.0 varity_r: code_size: 2032897 commercial_warning: null data_size: 5235814400 data_sources: 1.0.0: null data_versions: 1.0.0: 1.0.0 datasource: null description: Improved pathogenicity prediction for rare human missense variants developer: citation: https://doi.org/10.1016%2Fj.ajhg.2021.08.012 email: support@opencravat.org name: Yingzhou Wu, et. al. organization: University of Toronto website: http://varity.varianteffect.org/ groups: [] has_logo: true hidden: false latest_version: 1.0.0 publish_time: 2023-05-25T19:03:43.128806+0000 requires: null size: 5237847297 tags: - variants - variant effect prediction title: VARITY_R type: annotator versions: - 1.0.0 varmeta: code_size: 1497 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: Aggregates tags and samples developer: citation: '' email: support@cravat.us name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2020-03-17T19:21:41.695399+0000 requires: null size: 1497 tags: null title: Variant Metadata type: postaggregator versions: - 1.0.0 vcf-converter: code_size: 38113 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null 1.1.6: null datasource: null description: Converter for VCF format input developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.6 publish_time: '2018-12-21T16:49:41.000000' requires: null size: 38113 tags: null title: VCF Converter type: converter versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 - 1.1.6 vcfinfo: code_size: 4683 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null 1.1.5: null datasource: null description: Writes VCF file information extracted by converter developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.5 publish_time: '2018-05-18T14:15:57.000000' requires: - wgvcfinfo size: 4683 tags: null title: VCF Info type: postaggregator versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 - 1.1.5 vest: code_size: 222287 commercial_warning: null data_size: 9748356693 data_sources: 4.0.0: null 4.0.1: null 4.0.2: v4 4.0.4: v4 4.0.5: v4 4.0.6: v4 4.0.7: v4 4.0.8: v4 4.0.9: v4 data_versions: 4.0.0: 4.0.0 4.0.1: 4.0.0 4.0.2: 4.0.0 4.0.4: 4.0.0 4.0.5: 4.0.0 4.0.6: 4.0.0 4.0.7: 4.0.0 4.0.8: 4.0.0 4.0.9: 4.0.0 datasource: v4 description: VEST annotation developer: citation: Douville, C., Masica, D. L., Stenson, P. D., et al. (2016). Assessing the pathogenicity of insertion and deletion variants with the variant effect scoring tool (VEST-Indel). Human mutation, 37(1), 28-35. email: '' name: Johns Hopkins University - Karchin Lab organization: Johns Hopkins University - Karchin Lab website: http://karchinlab.org/apps/appVest.html groups: [] has_logo: true hidden: false latest_version: 4.0.9 publish_time: 2019-01-30T18:47:42.647635+0000 requires: - wgndexvestsummary - wgvest size: 9748578980 tags: - variants - genes - variant effect prediction title: VEST type: annotator versions: - 4.0.0 - 4.0.1 - 4.0.2 - 4.0.4 - 4.0.5 - 4.0.6 - 4.0.7 - 4.0.8 - 4.0.9 vista_enhancer: code_size: 19316 commercial_warning: For commercial use, contact vtdelapuente@lbl.gov data_size: 108548 data_sources: 2019.05.09: hg19 2019.08.02: hg19 2019.2.5: hg19 2019.3.22: hg19 2019.3.4: hg19 data_versions: 2019.05.09: 2019.3.22 2019.08.02: 2019.3.22 2019.2.5: 2019.2.5 2019.3.22: 2019.3.22 2019.3.4: 2019.2.5 datasource: hg19 description: Experimentally validated enhancers from the VISTA Enhancer Browser developer: citation: "Visel, A., Minovitsky, S., Dubchak, I., & Pennacchio, L. A. (2006).\ \ VISTA Enhancer Browser\u2014a database of tissue-specific human enhancers.\ \ Nucleic acids research, 35(suppl_1), D88-D92." email: vtdelapuente@lbl.gov name: Lawrence Berkeley National Laboratory organization: Lawrence Berkeley National Laboratory website: https://enhancer.lbl.gov/ groups: [] has_logo: true hidden: false latest_version: 2019.08.02 publish_time: 2019-02-11T20:10:23.260495+0000 requires: null size: 127864 tags: - non coding - functional studies title: VISTA Enhancer Browser type: annotator versions: - 2019.2.5 - 2019.3.4 - 2019.3.22 - 2019.05.09 - 2019.08.02 wgbase: code_size: 4519 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null datasource: null description: Base information webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.4 publish_time: '2018-11-01T00:15:58.000000' requires: null size: 4519 tags: - visualization widgets title: Base information type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wgbiogrid: code_size: 56877 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: BioGRID webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2019-01-08T21:36:07.000000' requires: null size: 56877 tags: - visualization widgets title: BioGRID type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgbrca1_func_assay: code_size: 669 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: BRCA1 Functional Assay webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:14:26.847780+0000 requires: null size: 669 tags: - visualization title: BRCA1 Functional Assay type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgcgc: code_size: 14721 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: Cancer genome census webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:14:42.564704+0000 requires: null size: 14721 tags: - visualization widgets title: Cancer Genome Census type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgcglsummary: code_size: 71017 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.5: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.5: null datasource: null description: Cancer Gene Landscape Summary result viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.5 publish_time: '2018-10-26T20:43:31.000000' requires: null size: 71017 tags: null title: Cancer Gene Landscape Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.5 wgchasmplus: code_size: 77880 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null datasource: null description: CHASMplus webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.6 publish_time: '2018-10-26T20:46:00.000000' requires: null size: 77880 tags: - visualization widgets title: CHASMplus widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 wgcircossummary: code_size: 622489 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null data_versions: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null datasource: null description: Circos Summary result viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.4 publish_time: '2018-09-26T01:39:06.000000' requires: null size: 622489 tags: null title: Circos Summary type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 wgcivic: code_size: 45009 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.2: null data_versions: 1.0.0: null 1.0.2: null datasource: null description: CIViC webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2018-10-26T20:46:25.000000' requires: null size: 45009 tags: - visualization widgets title: CIViC type: webviewerwidget versions: - 1.0.0 - 1.0.2 wgcivic_gene: code_size: 44943 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.5: null data_versions: 1.0.0: null 1.0.1: null 1.0.5: null datasource: null description: CIViC Gene webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.5 publish_time: '2018-10-26T20:46:48.000000' requires: null size: 44943 tags: - visualization widgets title: CIViC Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.5 wgclinvar: code_size: 39780 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null datasource: null description: Clinvar webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.4 publish_time: '2019-01-08T21:10:10.000000' requires: null size: 39780 tags: - visualization widgets title: Clinvar type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wgcodingvsnoncodingsummary: code_size: 3017 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.2: null 1.0.4: null 1.0.5: null data_versions: 1.0.0: null 1.0.2: null 1.0.4: null 1.0.5: null datasource: null description: Coding vs noncoding summary webviewer widget developer: email: rkim@insilico.us.com itation: '' name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.5 publish_time: '2018-09-26T01:39:16.000000' requires: null size: 3017 tags: null title: Coding vs Noncoding Summary type: webviewerwidget versions: - 1.0.0 - 1.0.2 - 1.0.4 - 1.0.5 wgcosmic: code_size: 15697 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: Cosmic webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:16:28.419376+0000 requires: null size: 15697 tags: - visualization widgets title: Cosmic type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgcosmic_gene: code_size: 15492 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Cosmic gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2019-01-09T15:45:32.000000' requires: null size: 15492 tags: - visualization widgets title: Cosmic Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgdbsnp: code_size: 6607 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: dbSNP webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2018-10-26T20:48:34.000000' requires: null size: 6607 tags: - visualization widgets title: dbSNP type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgdenovo: code_size: 5329 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.6.1: null 1.6.2: null 1.6.3: null data_versions: 1.0.0: null 1.6.1: null 1.6.2: null 1.6.3: null datasource: null description: denovo-db webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.6.3 publish_time: '2018-08-16T21:54:54.000000' requires: null size: 5329 tags: - visualization widgets title: denovo-db type: webviewerwidget versions: - 1.0.0 - 1.6.1 - 1.6.2 - 1.6.3 wgesp6500: code_size: 16984 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: ESP6500 webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:17:28.803767+0000 requires: null size: 16984 tags: - visualization title: ESP6500 type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgess_gene: code_size: 776 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Essential Gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2018-12-05T18:37:27.000000' requires: null size: 776 tags: - visualization widgets title: Essential Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgfathmm: code_size: 1819 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: FATHMM webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-26T19:32:50.000000' requires: null size: 1819 tags: - visualization widgets title: FATHMM type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wggerp: code_size: 694 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: GERP++ web viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-12-11T20:29:41.000000' requires: null size: 694 tags: - visualization title: GERP++ type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgghis: code_size: 541 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: GHIS webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-29T17:04:37.000000' requires: null size: 541 tags: - visualization title: GHIS type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wggnomad: code_size: 23818 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null datasource: null description: gnomAD webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.1 publish_time: '2018-10-26T20:49:59.000000' requires: null size: 23818 tags: - visualization title: gnomAD type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 wggnomad3: code_size: 23798 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: gnomAD3 webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2020-09-14T19:54:34.177886+0000 requires: null size: 23798 tags: - visualization title: gnomAD3 type: webviewerwidget versions: - 1.0.0 - 1.1.0 wggnomad_gene: code_size: 24934 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: gnomAD Gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:19:14.905227+0000 requires: null size: 24934 tags: - visualization widgets title: gnomAD Gene type: webviewerwidget versions: - 1.0.0 - 1.0.1 wggo: code_size: 10166 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null datasource: null description: Gene ontology webviewer widget developer: - email: rkim@mail.insilico.us.com - organization: In Silico Solutions groups: [] has_logo: true hidden: true latest_version: 1.0.5 publish_time: '2018-05-18T14:23:01.000000' requires: null size: 10166 tags: - visualization widgets title: Gene ontology type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 wggosummary: code_size: 18389 commercial_warning: null data_size: 10573824 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 datasource: null description: Gene Ontology Summary webviewer widget developer: citation: '' email: support@cravat.us name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.4 publish_time: '2018-10-26T20:50:29.000000' requires: null size: 10592213 tags: null title: Gene Ontology Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wggrasp: code_size: 6180 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null datasource: null description: GRASP webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.4 publish_time: '2018-10-26T20:50:48.000000' requires: null size: 6180 tags: - visualization widgets title: GRASP type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wggtex: code_size: 12752 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: GTEx webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: 2019-03-11T12:00:46.498740+0000 requires: null size: 12752 tags: - visualization widgets title: GTEx type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wggwas_catalog: code_size: 1184 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: GWAS Catalog webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2019-08-26T15:34:53.999669+0000 requires: null size: 1184 tags: - visualization widgets title: GWAS Catalog type: webviewerwidget versions: - 1.0.0 wghaplotypes: code_size: 2225 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Haplotype information webviewer widget developer: citation: '' email: mary.a.wood.91@gmail.com name: Mary Wood organization: OHSU website: '' groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: 2019-05-06T20:20:30.324476+0000 requires: null size: 2225 tags: - visualization widgets title: Haplotype Information type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wghg19: code_size: 614 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: hg19 info webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-13T18:48:37.000000' requires: null size: 614 tags: - visualization title: hg19 info widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wghgvs: code_size: 54982 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null datasource: null description: HGVS webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.4 publish_time: '2018-10-26T20:51:08.000000' requires: null size: 54982 tags: - visualization widgets title: Hgvs type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wgigv: code_size: 1576628 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null datasource: null description: igv.js integration into Open-CRAVAT developer: citation: "James T. Robinson, Helga Thorvaldsd\xF3ttir, Wendy Winckler, Mitchell\ \ Guttman, Eric S. Lander, Gad Getz, Jill P. Mesirov. Integrative Genomics Viewer.\ \ Nature Biotechnology 29, 24\u201326 (2011)\nHelga Thorvaldsd\xF3ttir, James\ \ T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance\ \ genomics data visualization and exploration. Briefings in Bioinformatics 14,\ \ 178-192 (2013)." email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: false latest_version: 1.0.4 publish_time: '2018-11-13T21:20:38.000000' requires: null size: 1576628 tags: - visualization widgets title: IGV type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 wgintact: code_size: 23784 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: IntAct webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.3 publish_time: '2019-01-08T21:38:13.000000' requires: null size: 23784 tags: - visualization widgets title: IntAct type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wginterpro: code_size: 128974 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: InterPro webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2019-01-10T14:43:23.000000' requires: null size: 128974 tags: - visualization widgets title: InterPro type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wglinsight: code_size: 134697 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: LINSIGHT webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.3 publish_time: '2018-10-26T20:51:29.000000' requires: null size: 134697 tags: - visualization widgets title: LINSIGHT type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgloftool: code_size: 779 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: LoFtool webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2018-12-11T20:29:31.000000' requires: null size: 779 tags: - visualization title: LoFtool type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wglollipop: code_size: 55395 commercial_warning: null data_size: 73099264 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.1: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.1.0: 1.1.0 1.1.1: 1.1.0 datasource: null description: Protein diagram webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.1 publish_time: '2018-11-14T22:12:07.000000' requires: null size: 73154659 tags: null title: Protein diagram type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.1 wgmitomap: code_size: 1602 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: MITOMAP webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.0 publish_time: 2021-06-24T18:40:50.866491+0000 requires: null size: 1602 tags: - visualization title: MITOMAP type: webviewerwidget versions: - 1.0.0 wgmupit: code_size: 312728 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: MuPIT webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2018-10-26T20:51:53.000000' requires: null size: 312728 tags: - visualization widgets title: MuPIT type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgmutation_assessor: code_size: 898 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Mutation Assessor webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2018-11-26T19:33:16.000000' requires: null size: 898 tags: - visualization widgets title: Mutation Assessor type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgmutpred1: code_size: 1654 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null datasource: null description: MutPred webviewer widget developer: citation: '' email: '' name: '' organization: '' website: '' groups: [] has_logo: false hidden: true latest_version: 1.0.6 publish_time: '2018-11-28T16:34:00.000000' requires: null size: 1654 tags: - visualization widgets title: MutPred type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 wgncbigene: code_size: 60791 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: NCBI Gene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: 2019-05-06T20:23:02.251057+0000 requires: null size: 60791 tags: - visualization widgets title: NCBI Gene Widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgncrna: code_size: 49918 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Non-coding RNA webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2018-10-26T20:53:07.000000' requires: null size: 49918 tags: - visualization widgets title: Non-coding RNA diagram type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgndex: code_size: 817196 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null datasource: null description: NDEx webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.6 publish_time: '2018-10-26T20:53:26.000000' requires: null size: 817196 tags: - visualization widgets title: NDEx type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 wgndexchasmplussummary: code_size: 5320230 commercial_warning: null data_size: 109242 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 datasource: null description: NDEx CHASMplus Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.6 publish_time: '2018-09-26T01:40:59.000000' requires: null size: 5429472 tags: null title: NDEx CHASMplus Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 wgndexvestsummary: code_size: 5318472 commercial_warning: null data_size: 109242 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null 1.0.4: null 1.0.5: null 1.0.6: null 1.0.7: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 1.0.3: 1.0.0 1.0.4: 1.0.0 1.0.5: 1.0.0 1.0.6: 1.0.0 1.0.7: 1.0.0 datasource: null description: NDEx VEST Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.7 publish_time: '2018-09-26T01:41:16.000000' requires: null size: 5427714 tags: null title: NDEx VEST Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 - 1.0.4 - 1.0.5 - 1.0.6 - 1.0.7 wgnote: code_size: 6037 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: Note-taking widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.3 publish_time: '2019-01-12T16:58:39.000000' requires: null size: 6037 tags: - notes title: Note type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgpharmgkb: code_size: 1429 commercial_warning: null data_size: 0 data_sources: 1.0.0: null data_versions: 1.0.0: null datasource: null description: PharmGKB webviewer widget developer: citation: '' email: kmoad@insilico.us.com name: Kyle Moad organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.0 publish_time: 2019-09-30T19:48:42.874848+0000 requires: null size: 1429 tags: - visualization widgets title: PharmGKB type: webviewerwidget versions: - 1.0.0 wgphastcons: code_size: 899 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: phastCons web viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-26T19:53:49.000000' requires: null size: 899 tags: - visualization widgets title: Phast Cons type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgphdsnpg: code_size: 7483 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: PhDSNPg developer: citation: '' email: support@cravat.us name: Kyle Moad organization: In Silico Solutions website: '' groups: [] has_logo: true hidden: true latest_version: 1.0.3 publish_time: '2018-10-26T20:53:55.000000' requires: null size: 7483 tags: - visualization widgets title: PhDSNPg type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgphi: code_size: 601 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: P(HI) webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2019-01-08T21:39:02.000000' requires: null size: 601 tags: - visualization title: P(HI) type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgphylop: code_size: 828 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: PhyloP webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2019-01-03T20:32:39.000000' requires: null size: 828 tags: - visualization widgets title: PhyloP type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgprec: code_size: 686 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: P(rec) webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2019-01-08T21:39:35.000000' requires: null size: 686 tags: - visualization widgets title: P(rec) type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgpseudogene: code_size: 12861 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Pseudogene webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2018-10-26T20:54:52.000000' requires: null size: 12861 tags: - visualization widgets title: Pseudogene type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgpubmed: code_size: 29458 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: PubMed webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: 2019-05-06T20:25:18.796147+0000 requires: null size: 29458 tags: - visualization widgets title: PubMed type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgrevel: code_size: 33975 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: REVEL webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: '2018-10-26T20:55:49.000000' requires: null size: 33975 tags: - visualization widgets title: REVEL widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgrvis: code_size: 890 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: RVIS webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.2 publish_time: '2019-01-09T16:07:12.000000' requires: null size: 890 tags: - visualization widgets title: RVIS type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgsiphy: code_size: 1202 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: SiPhy webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:26:19.430462+0000 requires: null size: 1202 tags: - visualization widgets title: SiPhy type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgsosamplesummary: code_size: 11089 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null data_versions: 1.0.0: null 1.1.0: null 1.1.1: null 1.1.2: null 1.1.3: null 1.1.4: null datasource: null description: Sequence Ontology Sample Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.4 publish_time: '2018-09-26T01:41:46.000000' requires: null size: 11089 tags: null title: Sequence Ontology Sample Summary type: webviewerwidget versions: - 1.0.0 - 1.1.0 - 1.1.1 - 1.1.2 - 1.1.3 - 1.1.4 wgsosummary: code_size: 3800 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.2: null 1.1.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null 1.1.2: null 1.1.3: null datasource: null description: Sequence Ontology Summary result viewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.3 publish_time: '2018-09-26T01:41:51.000000' requires: null size: 3800 tags: - visualization widgets title: Sequence Ontology Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 - 1.1.2 - 1.1.3 wgtarget: code_size: 63396 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null datasource: null description: Target webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.2 publish_time: 2019-05-06T20:27:05.179368+0000 requires: null size: 63396 tags: - visualization widgets title: Target type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgthousandgenomes: code_size: 24174 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.1.0 publish_time: 2019-05-06T20:27:21.302904+0000 requires: null size: 24174 tags: - visualization title: 1000 Genomes type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.1.0 wgthousandgenomes_ad_mixed_american: code_size: 1357 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.175610+0000 requires: null size: 1357 tags: - visualization title: 1000 Genomes-Ad Mixed American type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_african: code_size: 1621 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.186767+0000 requires: null size: 1621 tags: - visualization title: 1000 Genomes-African type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_east_asian: code_size: 1410 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.196641+0000 requires: null size: 1410 tags: - visualization title: 1000 Genomes-East Asian type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_european: code_size: 1392 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.207269+0000 requires: null size: 1392 tags: - visualization title: 1000 Genomes-European type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgthousandgenomes_south_asian: code_size: 1419 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.1.0: null data_versions: 1.0.0: null 1.1.0: null datasource: null description: 1000 genomes webviewer widget developer: citation: '' email: mlarsen@insilico.us.com name: Madison Larsen organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.1.0 publish_time: 2021-01-13T17:54:36.217555+0000 requires: null size: 1419 tags: - visualization title: 1000 Genomes-South Asian type: webviewerwidget versions: - 1.0.0 - 1.1.0 wgtopgeneschasmplussummary: code_size: 2892 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: Top Genes CHSAMplus Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-10-16T18:07:44.000000' requires: null size: 2892 tags: null title: Top Genes CHASMplus Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgtopgenessummary: code_size: 7360 commercial_warning: null data_size: 619520 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null data_versions: 1.0.0: 1.0.0 1.0.1: 1.0.0 1.0.2: 1.0.0 datasource: null description: Top Genes Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: false latest_version: 1.0.2 publish_time: '2018-09-26T01:42:15.000000' requires: null size: 626880 tags: null title: Top Genes Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 wgtopgenesvestsummary: code_size: 4175 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: Top Genes VEST Summary webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-10-16T18:07:59.000000' requires: null size: 4175 tags: null title: Top Genes VEST Summary type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wguk10k_cohort: code_size: 52168 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null data_versions: 1.0.0: null 1.0.1: null datasource: null description: UK10K Cohort webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.1 publish_time: 2019-05-06T20:27:52.817920+0000 requires: null size: 52168 tags: - visualization widgets title: UK10K Cohort type: webviewerwidget versions: - 1.0.0 - 1.0.1 wgvcfinfo: code_size: 910 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: VCF info webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: false hidden: true latest_version: 1.0.3 publish_time: '2018-11-13T18:45:14.000000' requires: null size: 910 tags: - visualization title: VCF info widget type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3 wgvest: code_size: 162750 commercial_warning: null data_size: 0 data_sources: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null data_versions: 1.0.0: null 1.0.1: null 1.0.2: null 1.0.3: null datasource: null description: VEST webviewer widget developer: citation: '' email: rkim@insilico.us.com name: Rick Kim organization: In Silico Solutions website: http://www.insilico.us.com groups: [] has_logo: true hidden: true latest_version: 1.0.3 publish_time: '2018-10-29T20:25:54.000000' requires: null size: 162750 tags: - visualization widgets title: VEST type: webviewerwidget versions: - 1.0.0 - 1.0.1 - 1.0.2 - 1.0.3